Hierarchy For Package vcf

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • vcf.BasicGT (implements vcf.GT)
  • vcf.BasicGTRec (implements vcf.GTRec)
  • vcf.BasicMarker (implements vcf.Marker)
  • vcf.BitArrayGTRec (implements vcf.GTRec)
  • vcf.BitArrayRefGTRec (implements vcf.GTRec)
  • vcf.FilterUtil
  • vcf.IntervalVcfIt<E> (implements blbutil.SampleFileIt<E>)
  • vcf.LowMafDiallelicGTRec (implements vcf.GTRec)
  • vcf.LowMafGTRec (implements vcf.GTRec)
  • vcf.LowMafRefDiallelicGTRec (implements vcf.RefGTRec)
  • vcf.LowMafRefGTRec (implements vcf.RefGTRec)
  • vcf.MarkerIndices
  • vcf.MarkerMap
  • vcf.Markers
  • vcf.PlinkGenMap (implements vcf.GeneticMap)
  • vcf.PositionMap (implements vcf.GeneticMap)
  • vcf.RefGT (implements vcf.GT)
  • vcf.RefIt (implements blbutil.SampleFileIt<E>)
  • vcf.RefTargSlidingWindow (implements vcf.SlidingWindow)
  • vcf.RestrictedGT (implements vcf.GT)
  • vcf.RestrictedVcfWindow (implements java.io.Closeable)
  • vcf.Samples
  • vcf.SeqCodedRefGTRec (implements vcf.RefGTRec)
  • vcf.SplicedGT (implements vcf.GT)
  • vcf.Steps
  • vcf.TargSlidingWindow (implements vcf.SlidingWindow)
  • vcf.VcfHeader
  • vcf.VcfIt<E> (implements blbutil.SampleFileIt<E>)
  • vcf.VcfMetaInfo
  • vcf.VcfRec (implements vcf.GTRec)
  • vcf.VcfRecBuilder
  • vcf.VcfRecGTParser
  • vcf.VcfRecGTParser.HapListRep
  • vcf.VcfWriter
  • vcf.Window
  • vcf.XRefGT (implements vcf.GT)

Interface Hierarchy

• java.lang.AutoCloseable
  • java.io.Closeable
    • vcf.SlidingWindow
• java.lang.Comparable<T>
  • vcf.Marker
• vcf.GeneticMap
• vcf.GT
• ints.IntArray
  • vcf.DuplicatesGTRec (also extends vcf.MarkerContainer)
    • vcf.GTRec
      • vcf.RefGTRec
• vcf.MarkerContainer
  • vcf.DuplicatesGTRec (also extends ints.IntArray)
    • vcf.GTRec
      • vcf.RefGTRec