VTK  9.3.0
vtkProteinRibbonFilter.h
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1// SPDX-FileCopyrightText: Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
2// SPDX-License-Identifier: BSD-3-Clause
3
4#ifndef vtkProteinRibbonFilter_h
5#define vtkProteinRibbonFilter_h
6
18#include "vtkDomainsChemistryModule.h" // for export macro
20
21#include "vtkColor.h" // For vtkColor3ub.
22#include <map> // For element to color map.
23
24VTK_ABI_NAMESPACE_BEGIN
25class vtkVector3f;
26class vtkStringArray;
27
28class VTKDOMAINSCHEMISTRY_EXPORT vtkProteinRibbonFilter : public vtkPolyDataAlgorithm
29{
30public:
32 void PrintSelf(ostream& os, vtkIndent indent) override;
33
35
37
40 vtkGetMacro(CoilWidth, float);
41 vtkSetMacro(CoilWidth, float);
43
45
48 vtkGetMacro(HelixWidth, float);
49 vtkSetMacro(HelixWidth, float);
51
53
56 vtkGetMacro(SubdivideFactor, int);
57 vtkSetMacro(SubdivideFactor, int);
59
61
64 vtkGetMacro(DrawSmallMoleculesAsSpheres, bool);
65 vtkSetMacro(DrawSmallMoleculesAsSpheres, bool);
67
69
72 vtkGetMacro(SphereResolution, int);
73 vtkSetMacro(SphereResolution, int);
75
76protected:
79
81
83
85 std::vector<std::pair<vtkVector3f, bool>>& p1, std::vector<std::pair<vtkVector3f, bool>>& p2,
86 std::vector<vtkColor3ub>& colors);
87
88 void CreateAtomAsSphere(vtkPolyData* poly, vtkUnsignedCharArray* pointsColors, double* pos,
89 const vtkColor3ub& color, float radius, float scale);
90
91 static std::vector<vtkVector3f>* Subdivide(std::vector<std::pair<vtkVector3f, bool>>& p, int div);
92
93 void SetColorByAtom(std::vector<vtkColor3ub>& colors, vtkStringArray* atomTypes);
94
95 void SetColorByStructure(std::vector<vtkColor3ub>& colors, vtkStringArray* atomTypes,
96 vtkUnsignedCharArray* ss, const vtkColor3ub& helixColor, const vtkColor3ub& sheetColor);
97
98 std::map<std::string, vtkColor3ub> ElementColors;
99
105
106private:
108 void operator=(const vtkProteinRibbonFilter&) = delete;
109};
110
111VTK_ABI_NAMESPACE_END
112#endif // vtkProteinRibbonFilter_h
Some derived classes for the different colors commonly used.
Definition vtkColor.h:184
a simple class to control print indentation
Definition vtkIndent.h:29
Store zero or more vtkInformation instances.
Store vtkAlgorithm input/output information.
represent and manipulate 3D points
Definition vtkPoints.h:29
Superclass for algorithms that produce only polydata as output.
concrete dataset represents vertices, lines, polygons, and triangle strips
Definition vtkPolyData.h:80
generates protein ribbons
~vtkProteinRibbonFilter() override
void SetColorByStructure(std::vector< vtkColor3ub > &colors, vtkStringArray *atomTypes, vtkUnsignedCharArray *ss, const vtkColor3ub &helixColor, const vtkColor3ub &sheetColor)
void SetColorByAtom(std::vector< vtkColor3ub > &colors, vtkStringArray *atomTypes)
void PrintSelf(ostream &os, vtkIndent indent) override
Methods invoked by print to print information about the object including superclasses.
static std::vector< vtkVector3f > * Subdivide(std::vector< std::pair< vtkVector3f, bool > > &p, int div)
void CreateThinStrip(vtkPolyData *poly, vtkUnsignedCharArray *pointsColors, vtkPoints *p, std::vector< std::pair< vtkVector3f, bool > > &p1, std::vector< std::pair< vtkVector3f, bool > > &p2, std::vector< vtkColor3ub > &colors)
std::map< std::string, vtkColor3ub > ElementColors
int FillInputPortInformation(int, vtkInformation *) override
Fill the input port information objects for this algorithm.
int RequestData(vtkInformation *, vtkInformationVector **, vtkInformationVector *) override
This is called by the superclass.
static vtkProteinRibbonFilter * New()
void CreateAtomAsSphere(vtkPolyData *poly, vtkUnsignedCharArray *pointsColors, double *pos, const vtkColor3ub &color, float radius, float scale)
a vtkAbstractArray subclass for strings
dynamic, self-adjusting array of unsigned char