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"create_arraysequences_from_generator() (in module nibabel.streamlines.array_sequence)": [[119, "nibabel.streamlines.array_sequence.create_arraysequences_from_generator", false]], "create_empty_header() (nibabel.streamlines.tck.tckfile class method)": [[119, "nibabel.streamlines.tck.TckFile.create_empty_header", false]], "create_empty_header() (nibabel.streamlines.tractogram_file.tractogramfile class method)": [[119, "nibabel.streamlines.tractogram_file.TractogramFile.create_empty_header", false]], "create_empty_header() (nibabel.streamlines.trk.trkfile class method)": [[119, "nibabel.streamlines.trk.TrkFile.create_empty_header", false]], "csaerror (class in nibabel.nicom.csareader)": [[102, "nibabel.nicom.csareader.CSAError", false]], "csareaderror (class in nibabel.nicom.csareader)": [[102, "nibabel.nicom.csareader.CSAReadError", false]], "data (nibabel.cifti2.cifti2.cifti2metadata property)": [[77, "nibabel.cifti2.cifti2.Cifti2MetaData.data", false]], "data (nibabel.gifti.gifti.giftimetadata property)": [[94, "nibabel.gifti.gifti.GiftiMetaData.data", false]], "data (nibabel.streamlines.tractogram.lazytractogram property)": [[119, "nibabel.streamlines.tractogram.LazyTractogram.data", false]], "data_from_fileobj() (nibabel.analyze.analyzeheader method)": [[69, "nibabel.analyze.AnalyzeHeader.data_from_fileobj", false]], "data_from_fileobj() (nibabel.ecat.ecatsubheader method)": [[84, "nibabel.ecat.EcatSubHeader.data_from_fileobj", false]], "data_from_fileobj() (nibabel.freesurfer.mghformat.mghheader method)": [[92, "nibabel.freesurfer.mghformat.MGHHeader.data_from_fileobj", false]], "data_from_fileobj() (nibabel.minc1.mincheader method)": [[99, "nibabel.minc1.MincHeader.data_from_fileobj", false]], "data_from_fileobj() (nibabel.spatialimages.spatialheader method)": [[116, "nibabel.spatialimages.SpatialHeader.data_from_fileobj", false]], "data_layout (nibabel.minc1.mincheader attribute)": [[99, "nibabel.minc1.MincHeader.data_layout", false]], "data_layout (nibabel.spatialimages.spatialheader attribute)": [[116, "nibabel.spatialimages.SpatialHeader.data_layout", false]], "data_per_point (nibabel.streamlines.tractogram.lazytractogram property)": [[119, "nibabel.streamlines.tractogram.LazyTractogram.data_per_point", false]], "data_per_point (nibabel.streamlines.tractogram.tractogram property)": [[119, "nibabel.streamlines.tractogram.Tractogram.data_per_point", false]], "data_per_streamline (nibabel.streamlines.tractogram.lazytractogram property)": [[119, "nibabel.streamlines.tractogram.LazyTractogram.data_per_streamline", false]], "data_per_streamline (nibabel.streamlines.tractogram.tractogram property)": [[119, "nibabel.streamlines.tractogram.Tractogram.data_per_streamline", false]], "data_to_fileobj() (nibabel.analyze.analyzeheader method)": [[69, "nibabel.analyze.AnalyzeHeader.data_to_fileobj", false]], "data_to_fileobj() (nibabel.minc1.mincheader method)": [[99, "nibabel.minc1.MincHeader.data_to_fileobj", false]], "data_to_fileobj() (nibabel.spatialimages.spatialheader method)": [[116, "nibabel.spatialimages.SpatialHeader.data_to_fileobj", false]], "dataerror (class in nibabel.data)": [[79, "nibabel.data.DataError", false]], "dataerror (class in nibabel.streamlines.tractogram_file)": [[119, "nibabel.streamlines.tractogram_file.DataError", false]], "dataobj (nibabel.dataobj_images.dataobjimage property)": [[80, "nibabel.dataobj_images.DataobjImage.dataobj", false]], "dataobjimage (class in nibabel.dataobj_images)": [[80, "nibabel.dataobj_images.DataobjImage", false]], "datasource (class in nibabel.data)": [[79, "nibabel.data.Datasource", false]], "datasource_or_bomber() (in module nibabel.data)": [[79, "nibabel.data.datasource_or_bomber", false]], "datawarning (class in nibabel.streamlines.tractogram_file)": [[119, "nibabel.streamlines.tractogram_file.DataWarning", false]], "decode_value_from_name() (in module nibabel.streamlines.trk)": [[119, "nibabel.streamlines.trk.decode_value_from_name", false]], "default_compresslevel (nibabel.openers.opener attribute)": [[106, "nibabel.openers.Opener.default_compresslevel", false]], "default_level_or_option (nibabel.openers.opener attribute)": [[106, "nibabel.openers.Opener.default_level_or_option", false]], "default_structarr() (nibabel.analyze.analyzeheader class method)": [[69, "nibabel.analyze.AnalyzeHeader.default_structarr", false]], "default_structarr() (nibabel.ecat.ecatheader class method)": [[84, "nibabel.ecat.EcatHeader.default_structarr", false]], "default_structarr() (nibabel.freesurfer.mghformat.mghheader class method)": [[92, "nibabel.freesurfer.mghformat.MGHHeader.default_structarr", false]], "default_structarr() (nibabel.nifti1.nifti1header class method)": [[103, "nibabel.nifti1.Nifti1Header.default_structarr", false]], "default_structarr() (nibabel.nifti2.nifti2header class method)": [[104, "nibabel.nifti2.Nifti2Header.default_structarr", false]], "default_structarr() (nibabel.spm99analyze.spmanalyzeheader class method)": [[118, "nibabel.spm99analyze.SpmAnalyzeHeader.default_structarr", false]], "default_structarr() (nibabel.wrapstruct.wrapstruct class method)": [[124, "nibabel.wrapstruct.WrapStruct.default_structarr", false]], "default_x_flip (nibabel.analyze.analyzeheader attribute)": [[69, "nibabel.analyze.AnalyzeHeader.default_x_flip", false]], "default_x_flip (nibabel.spatialimages.spatialheader attribute)": [[116, "nibabel.spatialimages.SpatialHeader.default_x_flip", false]], "default_zst_compresslevel (nibabel.openers.opener attribute)": [[106, "nibabel.openers.Opener.default_zst_compresslevel", false]], "deprecator (class in nibabel.deprecator)": [[82, "nibabel.deprecator.Deprecator", false]], "detect_format() (in module nibabel.streamlines)": [[119, "nibabel.streamlines.detect_format", false]], "deterministicgzipfile (class in nibabel.openers)": [[106, "nibabel.openers.DeterministicGzipFile", false]], "dfterror (class in nibabel.dft)": [[83, "nibabel.dft.DFTError", false]], "diagnose_binaryblock() (nibabel.freesurfer.mghformat.mghheader class method)": [[92, "nibabel.freesurfer.mghformat.MGHHeader.diagnose_binaryblock", false]], "diagnose_binaryblock() (nibabel.wrapstruct.wrapstruct class method)": [[124, "nibabel.wrapstruct.WrapStruct.diagnose_binaryblock", false]], "dicom_test() (in module nibabel.pydicom_compat)": [[112, "nibabel.pydicom_compat.dicom_test", false]], "dicomfs (class in nibabel.cmdline.dicomfs)": [[78, "nibabel.cmdline.dicomfs.DICOMFS", false]], "dicomreaderror (class in nibabel.nicom.dicomreaders)": [[102, "nibabel.nicom.dicomreaders.DicomReadError", false]], "diff() (in module nibabel.cmdline.diff)": [[78, "nibabel.cmdline.diff.diff", false]], "difference_update() (nibabel.cifti2.cifti2.cifti2metadata method)": [[77, "nibabel.cifti2.cifti2.Cifti2MetaData.difference_update", false]], "dim (nibabel.pointset.pointset property)": [[110, "nibabel.pointset.Pointset.dim", false]], "dimensions (nibabel.streamlines.header.field attribute)": [[119, "nibabel.streamlines.header.Field.DIMENSIONS", false]], "display_diff() (in module nibabel.cmdline.diff)": [[78, "nibabel.cmdline.diff.display_diff", false]], "dot_reduce() (in module nibabel.affines)": [[68, "nibabel.affines.dot_reduce", false]], "draw() (nibabel.viewers.orthoslicer3d method)": [[122, "nibabel.viewers.OrthoSlicer3D.draw", false]], "dtype (nibabel.arrayproxy.arrayproxy property)": [[70, "nibabel.arrayproxy.ArrayProxy.dtype", false]], "dtype (nibabel.parrec.parrecarrayproxy property)": [[109, "nibabel.parrec.PARRECArrayProxy.dtype", false]], "dtype (nibabel.pointset.gridindices attribute)": [[110, "nibabel.pointset.GridIndices.dtype", false]], "dtypemapper (class in nibabel.volumeutils)": [[123, "nibabel.volumeutils.DtypeMapper", false]], "dummy_fuse (class in nibabel.cmdline.dicomfs)": [[78, "nibabel.cmdline.dicomfs.dummy_fuse", false]], "ecatheader (class in nibabel.ecat)": [[84, "nibabel.ecat.EcatHeader", false]], "ecatimage (class in nibabel.ecat)": [[84, "nibabel.ecat.EcatImage", false]], "ecatimagearrayproxy (class in nibabel.ecat)": [[84, "nibabel.ecat.EcatImageArrayProxy", false]], "ecatsubheader (class in nibabel.ecat)": [[84, "nibabel.ecat.EcatSubHeader", false]], "encode_value_in_name() (in module nibabel.streamlines.trk)": [[119, "nibabel.streamlines.trk.encode_value_in_name", false]], "encoding (nibabel.nifti1.niftiextension attribute)": [[103, "nibabel.nifti1.NiftiExtension.encoding", false]], "endelementhandler() (nibabel.cifti2.parse_cifti2.cifti2parser method)": [[77, "nibabel.cifti2.parse_cifti2.Cifti2Parser.EndElementHandler", false]], "endelementhandler() (nibabel.gifti.parse_gifti_fast.giftiimageparser method)": [[94, "nibabel.gifti.parse_gifti_fast.GiftiImageParser.EndElementHandler", false]], "endelementhandler() (nibabel.xmlutils.xmlparser method)": [[125, "nibabel.xmlutils.XmlParser.EndElementHandler", false]], "endianness (nibabel.streamlines.header.field attribute)": [[119, "nibabel.streamlines.header.Field.ENDIANNESS", false]], "endianness (nibabel.wrapstruct.wrapstruct property)": [[124, "nibabel.wrapstruct.WrapStruct.endianness", false]], "eof_delimiter (nibabel.streamlines.tck.tckfile attribute)": [[119, "nibabel.streamlines.tck.TckFile.EOF_DELIMITER", false]], "error() (in module nibabel.cmdline.parrec2nii)": [[78, "nibabel.cmdline.parrec2nii.error", false]], "errorlevel (class in nibabel.imageglobals)": [[96, "nibabel.imageglobals.ErrorLevel", false]], "euler2angle_axis() (in module nibabel.eulerangles)": [[86, "nibabel.eulerangles.euler2angle_axis", false]], "euler2mat() (in module nibabel.eulerangles)": [[86, "nibabel.eulerangles.euler2mat", false]], "euler2quat() (in module nibabel.eulerangles)": [[86, "nibabel.eulerangles.euler2quat", false]], "expireddeprecationerror (class in nibabel.deprecator)": [[82, "nibabel.deprecator.ExpiredDeprecationError", false]], "extend() (nibabel.streamlines.array_sequence.arraysequence method)": [[119, "nibabel.streamlines.array_sequence.ArraySequence.extend", false]], "extend() (nibabel.streamlines.tractogram.lazytractogram method)": [[119, "nibabel.streamlines.tractogram.LazyTractogram.extend", false]], "extend() (nibabel.streamlines.tractogram.perarraydict method)": [[119, "nibabel.streamlines.tractogram.PerArrayDict.extend", false]], "extend() (nibabel.streamlines.tractogram.tractogram method)": [[119, "nibabel.streamlines.tractogram.Tractogram.extend", false]], "extensionwarning (class in nibabel.streamlines.tractogram_file)": [[119, "nibabel.streamlines.tractogram_file.ExtensionWarning", false]], "exts2pars() (in module nibabel.parrec)": [[109, "nibabel.parrec.exts2pars", false]], "exts_klass (nibabel.nifti1.nifti1header attribute)": [[103, "nibabel.nifti1.Nifti1Header.exts_klass", false]], "eye() (in module nibabel.quaternions)": [[113, "nibabel.quaternions.eye", false]], "fiber_delimiter (nibabel.streamlines.tck.tckfile attribute)": [[119, "nibabel.streamlines.tck.TckFile.FIBER_DELIMITER", false]], "field (class in nibabel.streamlines.header)": [[119, "nibabel.streamlines.header.Field", false]], "fields (nibabel.volumeutils.recoder attribute)": [[123, "nibabel.volumeutils.Recoder.fields", false]], "figs (nibabel.viewers.orthoslicer3d property)": [[122, "nibabel.viewers.OrthoSlicer3D.figs", false]], "file_like (nibabel.fileholders.fileholder property)": [[88, "nibabel.fileholders.FileHolder.file_like", false]], "filebasedheader (class in nibabel.filebasedimages)": [[87, "nibabel.filebasedimages.FileBasedHeader", false]], "filebasedimage (class in nibabel.filebasedimages)": [[87, "nibabel.filebasedimages.FileBasedImage", false]], "filehandle (class in nibabel.cmdline.dicomfs)": [[78, "nibabel.cmdline.dicomfs.FileHandle", false]], "fileholder (class in nibabel.fileholders)": [[88, "nibabel.fileholders.FileHolder", false]], "fileholdererror (class in nibabel.fileholders)": [[88, "nibabel.fileholders.FileHolderError", false]], "fileish (class in nibabel.openers)": [[106, "nibabel.openers.Fileish", false]], "fileno() (nibabel.openers.opener method)": [[106, "nibabel.openers.Opener.fileno", false]], "files_types (nibabel.analyze.analyzeimage attribute)": [[69, "nibabel.analyze.AnalyzeImage.files_types", false]], "files_types (nibabel.brikhead.afniimage attribute)": [[74, "nibabel.brikhead.AFNIImage.files_types", false]], "files_types (nibabel.cifti2.cifti2.cifti2image attribute)": [[77, "nibabel.cifti2.cifti2.Cifti2Image.files_types", false]], "files_types (nibabel.ecat.ecatimage attribute)": [[84, "nibabel.ecat.EcatImage.files_types", false]], "files_types (nibabel.filebasedimages.filebasedimage attribute)": [[87, "nibabel.filebasedimages.FileBasedImage.files_types", false]], "files_types (nibabel.freesurfer.mghformat.mghimage attribute)": [[92, "nibabel.freesurfer.mghformat.MGHImage.files_types", false]], "files_types (nibabel.gifti.gifti.giftiimage attribute)": [[94, "nibabel.gifti.gifti.GiftiImage.files_types", false]], "files_types (nibabel.minc1.minc1image attribute)": [[99, "nibabel.minc1.Minc1Image.files_types", false]], "files_types (nibabel.nifti1.nifti1image attribute)": [[103, "nibabel.nifti1.Nifti1Image.files_types", false]], "files_types (nibabel.parrec.parrecimage attribute)": [[109, "nibabel.parrec.PARRECImage.files_types", false]], "files_types (nibabel.spm99analyze.spm99analyzeimage attribute)": [[118, "nibabel.spm99analyze.Spm99AnalyzeImage.files_types", false]], "fileslice() (in module nibabel.fileslice)": [[90, "nibabel.fileslice.fileslice", false]], "filespec_to_file_map() (nibabel.brikhead.afniimage class method)": [[74, "nibabel.brikhead.AFNIImage.filespec_to_file_map", false]], "filespec_to_file_map() (nibabel.filebasedimages.filebasedimage class method)": [[87, "nibabel.filebasedimages.FileBasedImage.filespec_to_file_map", false]], "filespec_to_file_map() (nibabel.freesurfer.mghformat.mghimage class method)": [[92, 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(nibabel.arraywriters.arraywriter method)": [[71, "nibabel.arraywriters.ArrayWriter.finite_range", false]], "flip_axis() (in module nibabel.orientations)": [[108, "nibabel.orientations.flip_axis", false]], "float_to_int() (in module nibabel.casting)": [[76, "nibabel.casting.float_to_int", false]], "floatingerror (class in nibabel.casting)": [[76, "nibabel.casting.FloatingError", false]], "floor_exact() (in module nibabel.casting)": [[76, "nibabel.casting.floor_exact", false]], "floor_log2() (in module nibabel.casting)": [[76, "nibabel.casting.floor_log2", false]], "flush_chardata() (nibabel.cifti2.parse_cifti2.cifti2parser method)": [[77, "nibabel.cifti2.parse_cifti2.Cifti2Parser.flush_chardata", false]], "flush_chardata() (nibabel.gifti.parse_gifti_fast.giftiimageparser method)": [[94, "nibabel.gifti.parse_gifti_fast.GiftiImageParser.flush_chardata", false]], "fname_ext_ul_case() (in module nibabel.volumeutils)": [[123, "nibabel.volumeutils.fname_ext_ul_case", false]], "fobj (nibabel.openers.opener attribute)": [[106, "nibabel.openers.Opener.fobj", false]], "four_to_three() (in module nibabel.funcs)": [[93, "nibabel.funcs.four_to_three", false]], "frame_order (nibabel.nicom.dicomwrappers.multiframewrapper property)": [[102, "nibabel.nicom.dicomwrappers.MultiframeWrapper.frame_order", false]], "framefilter (class in nibabel.nicom.dicomwrappers)": [[102, "nibabel.nicom.dicomwrappers.FrameFilter", false]], "from_axes() (nibabel.cifti2.cifti2.cifti2header class method)": [[77, "nibabel.cifti2.cifti2.Cifti2Header.from_axes", false]], "from_brain_models() (nibabel.cifti2.cifti2_axes.parcelsaxis class method)": [[77, "nibabel.cifti2.cifti2_axes.ParcelsAxis.from_brain_models", false]], "from_bytes() (nibabel.filebasedimages.serializableimage class method)": [[87, "nibabel.filebasedimages.SerializableImage.from_bytes", false]], "from_bytes() (nibabel.nifti1.niftiextension class method)": [[103, "nibabel.nifti1.NiftiExtension.from_bytes", false]], "from_data_func() (nibabel.streamlines.tractogram.lazytractogram class method)": [[119, "nibabel.streamlines.tractogram.LazyTractogram.from_data_func", false]], "from_dict() (nibabel.gifti.gifti.giftimetadata class method)": [[94, "nibabel.gifti.gifti.GiftiMetaData.from_dict", false]], "from_file_map() (nibabel.analyze.analyzeimage class method)": [[69, "nibabel.analyze.AnalyzeImage.from_file_map", false]], "from_file_map() (nibabel.brikhead.afniimage class method)": [[74, "nibabel.brikhead.AFNIImage.from_file_map", false]], "from_file_map() (nibabel.cifti2.cifti2.cifti2image class method)": [[77, "nibabel.cifti2.cifti2.Cifti2Image.from_file_map", false]], "from_file_map() (nibabel.dataobj_images.dataobjimage class method)": [[80, "nibabel.dataobj_images.DataobjImage.from_file_map", false]], "from_file_map() (nibabel.ecat.ecatimage class method)": [[84, "nibabel.ecat.EcatImage.from_file_map", false]], "from_file_map() (nibabel.filebasedimages.filebasedimage class method)": [[87, 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(in module nibabel.arrayproxy)": [[70, "nibabel.arrayproxy.get_obj_dtype", false]], "get_object() (nibabel.nifti1.niftiextension method)": [[103, "nibabel.nifti1.NiftiExtension.get_object", false]], "get_opt_parser() (in module nibabel.cmdline.dicomfs)": [[78, "nibabel.cmdline.dicomfs.get_opt_parser", false]], "get_opt_parser() (in module nibabel.cmdline.diff)": [[78, "nibabel.cmdline.diff.get_opt_parser", false]], "get_opt_parser() (in module nibabel.cmdline.ls)": [[78, "nibabel.cmdline.ls.get_opt_parser", false]], "get_opt_parser() (in module nibabel.cmdline.parrec2nii)": [[78, "nibabel.cmdline.parrec2nii.get_opt_parser", false]], "get_origin_affine() (nibabel.spm99analyze.spm99analyzeheader method)": [[118, "nibabel.spm99analyze.Spm99AnalyzeHeader.get_origin_affine", false]], "get_paths() (nibabel.cmdline.dicomfs.dicomfs method)": [[78, "nibabel.cmdline.dicomfs.DICOMFS.get_paths", false]], "get_patient_orient() (nibabel.ecat.ecatheader method)": [[84, "nibabel.ecat.EcatHeader.get_patient_orient", false]], "get_pixel_array() (nibabel.nicom.dicomwrappers.wrapper method)": [[102, "nibabel.nicom.dicomwrappers.Wrapper.get_pixel_array", false]], "get_prepare_fileobj() (nibabel.fileholders.fileholder method)": [[88, "nibabel.fileholders.FileHolder.get_prepare_fileobj", false]], "get_q_vectors() (nibabel.parrec.parrecheader method)": [[109, "nibabel.parrec.PARRECHeader.get_q_vectors", false]], "get_qform() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.get_qform", false]], "get_qform() (nibabel.nifti1.nifti1pair method)": [[103, "nibabel.nifti1.Nifti1Pair.get_qform", false]], "get_qform_quaternion() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.get_qform_quaternion", false]], "get_ras2vox() (nibabel.freesurfer.mghformat.mghheader method)": [[92, "nibabel.freesurfer.mghformat.MGHHeader.get_ras2vox", false]], "get_rec_shape() (nibabel.parrec.parrecheader method)": [[109, "nibabel.parrec.PARRECHeader.get_rec_shape", false]], "get_scalar() (in module nibabel.nicom.csareader)": [[102, "nibabel.nicom.csareader.get_scalar", false]], "get_scaled_data() (nibabel.minc1.minc1file method)": [[99, "nibabel.minc1.Minc1File.get_scaled_data", false]], "get_scaled_data() (nibabel.minc2.minc2file method)": [[100, "nibabel.minc2.Minc2File.get_scaled_data", false]], "get_series_framenumbers() (in module nibabel.ecat)": [[84, "nibabel.ecat.get_series_framenumbers", false]], "get_sform() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.get_sform", false]], "get_sform() (nibabel.nifti1.nifti1pair method)": [[103, "nibabel.nifti1.Nifti1Pair.get_sform", false]], "get_shape() (nibabel.ecat.ecatsubheader method)": [[84, "nibabel.ecat.EcatSubHeader.get_shape", false]], "get_sizeondisk() (nibabel.nifti1.nifti1extensions method)": [[103, "nibabel.nifti1.Nifti1Extensions.get_sizeondisk", false]], "get_sizeondisk() (nibabel.nifti1.niftiextension method)": [[103, "nibabel.nifti1.NiftiExtension.get_sizeondisk", false]], "get_slice_duration() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.get_slice_duration", false]], "get_slice_normal() (in module nibabel.nicom.csareader)": [[102, "nibabel.nicom.csareader.get_slice_normal", false]], "get_slice_orientation() (nibabel.parrec.parrecheader method)": [[109, "nibabel.parrec.PARRECHeader.get_slice_orientation", false]], "get_slice_times() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.get_slice_times", false]], "get_slope_inter() (in module nibabel.arraywriters)": [[71, "nibabel.arraywriters.get_slope_inter", false]], "get_slope_inter() (nibabel.analyze.analyzeheader method)": [[69, "nibabel.analyze.AnalyzeHeader.get_slope_inter", false]], "get_slope_inter() (nibabel.brikhead.afniheader method)": [[74, "nibabel.brikhead.AFNIHeader.get_slope_inter", false]], "get_slope_inter() (nibabel.freesurfer.mghformat.mghheader method)": [[92, "nibabel.freesurfer.mghformat.MGHHeader.get_slope_inter", false]], "get_slope_inter() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.get_slope_inter", false]], "get_slope_inter() (nibabel.spm2analyze.spm2analyzeheader method)": [[117, "nibabel.spm2analyze.Spm2AnalyzeHeader.get_slope_inter", false]], "get_slope_inter() (nibabel.spm99analyze.spmanalyzeheader method)": [[118, "nibabel.spm99analyze.SpmAnalyzeHeader.get_slope_inter", false]], "get_sorted_slice_indices() (nibabel.parrec.parrecheader method)": [[109, "nibabel.parrec.PARRECHeader.get_sorted_slice_indices", false]], "get_space() (nibabel.brikhead.afniheader method)": [[74, "nibabel.brikhead.AFNIHeader.get_space", false]], "get_studies() (in module nibabel.dft)": [[83, "nibabel.dft.get_studies", false]], "get_subheaders() (nibabel.ecat.ecatimage method)": [[84, "nibabel.ecat.EcatImage.get_subheaders", false]], "get_unscaled() (nibabel.arrayproxy.arrayproxy method)": [[70, "nibabel.arrayproxy.ArrayProxy.get_unscaled", false]], "get_unscaled() (nibabel.parrec.parrecarrayproxy method)": [[109, "nibabel.parrec.PARRECArrayProxy.get_unscaled", false]], "get_unscaled_data() (nibabel.nicom.dicomwrappers.mosaicwrapper method)": [[102, "nibabel.nicom.dicomwrappers.MosaicWrapper.get_unscaled_data", false]], "get_unscaled_data() (nibabel.nicom.dicomwrappers.multiframewrapper method)": [[102, "nibabel.nicom.dicomwrappers.MultiframeWrapper.get_unscaled_data", false]], "get_unscaled_data() (nibabel.nicom.dicomwrappers.wrapper method)": [[102, "nibabel.nicom.dicomwrappers.Wrapper.get_unscaled_data", false]], "get_value_label() (nibabel.wrapstruct.labeledwrapstruct method)": [[124, "nibabel.wrapstruct.LabeledWrapStruct.get_value_label", false]], "get_vector() (in module nibabel.nicom.csareader)": [[102, "nibabel.nicom.csareader.get_vector", false]], "get_volume_labels() (nibabel.brikhead.afniheader method)": [[74, "nibabel.brikhead.AFNIHeader.get_volume_labels", false]], "get_volume_labels() (nibabel.parrec.parrecheader method)": [[109, "nibabel.parrec.PARRECHeader.get_volume_labels", false]], "get_vox2ras() (nibabel.freesurfer.mghformat.mghheader method)": [[92, "nibabel.freesurfer.mghformat.MGHHeader.get_vox2ras", false]], "get_vox2ras_tkr() (nibabel.freesurfer.mghformat.mghheader method)": [[92, "nibabel.freesurfer.mghformat.MGHHeader.get_vox2ras_tkr", false]], "get_water_fat_shift() (nibabel.parrec.parrecheader method)": [[109, "nibabel.parrec.PARRECHeader.get_water_fat_shift", false]], "get_xyzt_units() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.get_xyzt_units", false]], "get_zooms() (nibabel.analyze.analyzeheader method)": [[69, "nibabel.analyze.AnalyzeHeader.get_zooms", false]], "get_zooms() (nibabel.ecat.ecatsubheader method)": [[84, "nibabel.ecat.EcatSubHeader.get_zooms", false]], "get_zooms() (nibabel.freesurfer.mghformat.mghheader method)": [[92, "nibabel.freesurfer.mghformat.MGHHeader.get_zooms", false]], "get_zooms() (nibabel.minc1.minc1file method)": [[99, "nibabel.minc1.Minc1File.get_zooms", false]], "get_zooms() (nibabel.spatialimages.spatialheader method)": [[116, "nibabel.spatialimages.SpatialHeader.get_zooms", false]], "get_zooms() (nibabel.spatialimages.spatialprotocol method)": [[116, "nibabel.spatialimages.SpatialProtocol.get_zooms", false]], "getattr() (nibabel.cmdline.dicomfs.dicomfs method)": [[78, "nibabel.cmdline.dicomfs.DICOMFS.getattr", false]], "gifticoordsystem (class in nibabel.gifti.gifti)": [[94, "nibabel.gifti.gifti.GiftiCoordSystem", false]], "giftidataarray (class in nibabel.gifti.gifti)": [[94, "nibabel.gifti.gifti.GiftiDataArray", false]], "giftiimage (class in nibabel.gifti.gifti)": [[94, "nibabel.gifti.gifti.GiftiImage", false]], "giftiimageparser (class in nibabel.gifti.parse_gifti_fast)": [[94, "nibabel.gifti.parse_gifti_fast.GiftiImageParser", false]], "giftilabel (class in nibabel.gifti.gifti)": [[94, "nibabel.gifti.gifti.GiftiLabel", false]], "giftilabeltable (class in nibabel.gifti.gifti)": [[94, "nibabel.gifti.gifti.GiftiLabelTable", false]], "giftimetadata (class in nibabel.gifti.gifti)": [[94, "nibabel.gifti.gifti.GiftiMetaData", false]], "giftinvpairs (class in nibabel.gifti.gifti)": [[94, "nibabel.gifti.gifti.GiftiNVPairs", false]], "giftiparseerror (class in nibabel.gifti.parse_gifti_fast)": [[94, "nibabel.gifti.parse_gifti_fast.GiftiParseError", false]], "grid (class in nibabel.pointset)": [[110, "nibabel.pointset.Grid", false]], "gridindices (class in nibabel.pointset)": [[110, "nibabel.pointset.GridIndices", false]], "gridshape (nibabel.pointset.gridindices attribute)": [[110, "nibabel.pointset.GridIndices.gridshape", false]], "guessed_endian() (nibabel.analyze.analyzeheader class method)": [[69, "nibabel.analyze.AnalyzeHeader.guessed_endian", false]], "guessed_endian() (nibabel.ecat.ecatheader class method)": [[84, "nibabel.ecat.EcatHeader.guessed_endian", false]], "guessed_endian() (nibabel.freesurfer.mghformat.mghheader class method)": [[92, "nibabel.freesurfer.mghformat.MGHHeader.guessed_endian", false]], "guessed_endian() (nibabel.wrapstruct.wrapstruct class method)": [[124, "nibabel.wrapstruct.WrapStruct.guessed_endian", false]], "guessed_image_type() (in module nibabel.loadsave)": [[98, "nibabel.loadsave.guessed_image_type", false]], "gz_def (nibabel.openers.opener attribute)": [[106, "nibabel.openers.Opener.gz_def", false]], "handler_names (nibabel.xmlutils.xmlparser attribute)": [[125, "nibabel.xmlutils.XmlParser.HANDLER_NAMES", false]], "has_affine (nibabel.spm99analyze.spm99analyzeimage attribute)": [[118, "nibabel.spm99analyze.Spm99AnalyzeImage.has_affine", false]], "has_data_intercept (nibabel.analyze.analyzeheader attribute)": [[69, "nibabel.analyze.AnalyzeHeader.has_data_intercept", false]], "has_data_intercept (nibabel.nifti1.nifti1header attribute)": [[103, "nibabel.nifti1.Nifti1Header.has_data_intercept", false]], "has_data_intercept (nibabel.spm99analyze.spmanalyzeheader attribute)": [[118, "nibabel.spm99analyze.SpmAnalyzeHeader.has_data_intercept", false]], "has_data_slope (nibabel.analyze.analyzeheader attribute)": [[69, "nibabel.analyze.AnalyzeHeader.has_data_slope", false]], "has_data_slope (nibabel.nifti1.nifti1header attribute)": [[103, "nibabel.nifti1.Nifti1Header.has_data_slope", false]], "has_data_slope (nibabel.spm99analyze.spmanalyzeheader attribute)": [[118, "nibabel.spm99analyze.SpmAnalyzeHeader.has_data_slope", false]], "has_nan (nibabel.arraywriters.arraywriter property)": [[71, "nibabel.arraywriters.ArrayWriter.has_nan", false]], "hasdtype (class in nibabel.spatialimages)": [[116, "nibabel.spatialimages.HasDtype", false]], "have_binary128() (in module nibabel.casting)": [[76, "nibabel.casting.have_binary128", false]], "hdf5bunch (class in nibabel.minc2)": [[100, "nibabel.minc2.Hdf5Bunch", false]], "header (nibabel.filebasedimages.filebasedimage property)": [[87, "nibabel.filebasedimages.FileBasedImage.header", false]], "header (nibabel.streamlines.tractogram_file.tractogramfile property)": [[119, "nibabel.streamlines.tractogram_file.TractogramFile.header", false]], "header_class (nibabel.analyze.analyzeimage attribute)": [[69, "nibabel.analyze.AnalyzeImage.header_class", false]], "header_class (nibabel.brikhead.afniimage attribute)": [[74, "nibabel.brikhead.AFNIImage.header_class", false]], "header_class (nibabel.cifti2.cifti2.cifti2image attribute)": [[77, "nibabel.cifti2.cifti2.Cifti2Image.header_class", false]], "header_class (nibabel.ecat.ecatimage attribute)": [[84, "nibabel.ecat.EcatImage.header_class", false]], "header_class (nibabel.filebasedimages.filebasedimage attribute)": [[87, "nibabel.filebasedimages.FileBasedImage.header_class", false]], "header_class (nibabel.freesurfer.mghformat.mghimage attribute)": [[92, "nibabel.freesurfer.mghformat.MGHImage.header_class", false]], "header_class (nibabel.minc1.minc1image attribute)": [[99, "nibabel.minc1.Minc1Image.header_class", false]], "header_class (nibabel.minc2.minc2image attribute)": [[100, "nibabel.minc2.Minc2Image.header_class", false]], "header_class (nibabel.nifti1.nifti1image attribute)": [[103, "nibabel.nifti1.Nifti1Image.header_class", false]], "header_class (nibabel.nifti1.nifti1pair attribute)": [[103, "nibabel.nifti1.Nifti1Pair.header_class", false]], "header_class (nibabel.nifti2.nifti2image attribute)": [[104, "nibabel.nifti2.Nifti2Image.header_class", false]], "header_class (nibabel.nifti2.nifti2pair attribute)": [[104, "nibabel.nifti2.Nifti2Pair.header_class", false]], "header_class (nibabel.parrec.parrecimage attribute)": [[109, "nibabel.parrec.PARRECImage.header_class", false]], "header_class (nibabel.spatialimages.spatialimage attribute)": [[116, "nibabel.spatialimages.SpatialImage.header_class", false]], "header_class (nibabel.spm2analyze.spm2analyzeimage attribute)": [[117, "nibabel.spm2analyze.Spm2AnalyzeImage.header_class", false]], "header_class (nibabel.spm99analyze.spm99analyzeimage attribute)": [[118, "nibabel.spm99analyze.Spm99AnalyzeImage.header_class", false]], "header_size (nibabel.streamlines.trk.trkfile attribute)": [[119, "nibabel.streamlines.trk.TrkFile.HEADER_SIZE", false]], "headerdataerror (class in nibabel.spatialimages)": [[116, "nibabel.spatialimages.HeaderDataError", false]], "headererror (class in nibabel.streamlines.tractogram_file)": [[119, "nibabel.streamlines.tractogram_file.HeaderError", false]], "headertypeerror (class in nibabel.spatialimages)": [[116, "nibabel.spatialimages.HeaderTypeError", false]], "headerwarning (class in nibabel.streamlines.tractogram_file)": [[119, "nibabel.streamlines.tractogram_file.HeaderWarning", false]], "homogeneous (nibabel.pointset.pointset attribute)": [[110, "nibabel.pointset.Pointset.homogeneous", false]], "image_orient_patient (nibabel.nicom.dicomwrappers.multiframewrapper property)": [[102, "nibabel.nicom.dicomwrappers.MultiframeWrapper.image_orient_patient", false]], "image_orient_patient (nibabel.nicom.dicomwrappers.wrapper property)": [[102, "nibabel.nicom.dicomwrappers.Wrapper.image_orient_patient", false]], "image_position (nibabel.nicom.dicomwrappers.mosaicwrapper property)": [[102, "nibabel.nicom.dicomwrappers.MosaicWrapper.image_position", false]], "image_position (nibabel.nicom.dicomwrappers.multiframewrapper property)": [[102, "nibabel.nicom.dicomwrappers.MultiframeWrapper.image_position", false]], "image_position (nibabel.nicom.dicomwrappers.wrapper property)": [[102, "nibabel.nicom.dicomwrappers.Wrapper.image_position", false]], "image_shape (nibabel.nicom.dicomwrappers.mosaicwrapper property)": [[102, "nibabel.nicom.dicomwrappers.MosaicWrapper.image_shape", false]], "image_shape (nibabel.nicom.dicomwrappers.multiframewrapper property)": [[102, "nibabel.nicom.dicomwrappers.MultiframeWrapper.image_shape", false]], "image_shape (nibabel.nicom.dicomwrappers.wrapper property)": [[102, "nibabel.nicom.dicomwrappers.Wrapper.image_shape", false]], "imagearrayproxy (nibabel.analyze.analyzeimage attribute)": [[69, "nibabel.analyze.AnalyzeImage.ImageArrayProxy", false]], "imagearrayproxy (nibabel.brikhead.afniimage attribute)": [[74, "nibabel.brikhead.AFNIImage.ImageArrayProxy", false]], "imagearrayproxy (nibabel.ecat.ecatimage attribute)": [[84, "nibabel.ecat.EcatImage.ImageArrayProxy", false]], "imagearrayproxy (nibabel.freesurfer.mghformat.mghimage attribute)": [[92, "nibabel.freesurfer.mghformat.MGHImage.ImageArrayProxy", false]], "imagearrayproxy (nibabel.minc1.minc1image attribute)": [[99, "nibabel.minc1.Minc1Image.ImageArrayProxy", false]], "imagearrayproxy (nibabel.parrec.parrecimage attribute)": [[109, "nibabel.parrec.PARRECImage.ImageArrayProxy", false]], "imagedataerror (class in nibabel.spatialimages)": [[116, "nibabel.spatialimages.ImageDataError", false]], "imagefileerror (class in nibabel.filebasedimages)": [[87, "nibabel.filebasedimages.ImageFileError", false]], "imageopener (class in nibabel.openers)": [[106, "nibabel.openers.ImageOpener", false]], "imageslicer (nibabel.spatialimages.spatialimage attribute)": [[116, "nibabel.spatialimages.SpatialImage.ImageSlicer", false]], "img (nibabel.spatialimages.spatialfirstslicer attribute)": [[116, "nibabel.spatialimages.SpatialFirstSlicer.img", false]], "in_memory (nibabel.dataobj_images.dataobjimage property)": [[80, "nibabel.dataobj_images.DataobjImage.in_memory", false]], "ingivendirectory() (in module nibabel.tmpdirs)": [[120, "nibabel.tmpdirs.InGivenDirectory", false]], "insert() (nibabel.cifti2.cifti2.cifti2matrix method)": [[77, "nibabel.cifti2.cifti2.Cifti2Matrix.insert", false]], "insert() (nibabel.cifti2.cifti2.cifti2matrixindicesmap method)": [[77, "nibabel.cifti2.cifti2.Cifti2MatrixIndicesMap.insert", false]], "insert() (nibabel.cifti2.cifti2.cifti2vertexindices method)": [[77, "nibabel.cifti2.cifti2.Cifti2VertexIndices.insert", false]], "insert() (nibabel.cifti2.cifti2.cifti2vertices method)": [[77, "nibabel.cifti2.cifti2.Cifti2Vertices.insert", false]], "insert() (nibabel.cifti2.cifti2.cifti2voxelindicesijk method)": [[77, "nibabel.cifti2.cifti2.Cifti2VoxelIndicesIJK.insert", false]], "instance_number (nibabel.nicom.dicomwrappers.wrapper property)": [[102, "nibabel.nicom.dicomwrappers.Wrapper.instance_number", false]], "instance_to_filename() (nibabel.filebasedimages.filebasedimage class method)": [[87, "nibabel.filebasedimages.FileBasedImage.instance_to_filename", false]], "instancestackerror (class in nibabel.dft)": [[83, "nibabel.dft.InstanceStackError", false]], "int_abs() (in module nibabel.casting)": [[76, "nibabel.casting.int_abs", false]], "int_scinter_ftype() (in module nibabel.volumeutils)": [[123, "nibabel.volumeutils.int_scinter_ftype", false]], "int_to_float() (in module nibabel.casting)": [[76, "nibabel.casting.int_to_float", false]], "intemporarydirectory() (in module nibabel.tmpdirs)": [[120, "nibabel.tmpdirs.InTemporaryDirectory", false]], "inter (nibabel.arrayproxy.arrayproxy property)": [[70, "nibabel.arrayproxy.ArrayProxy.inter", false]], "inter (nibabel.arraywriters.slopeinterarraywriter property)": [[71, "nibabel.arraywriters.SlopeInterArrayWriter.inter", false]], "inv_ornt_aff() (in module nibabel.orientations)": [[108, "nibabel.orientations.inv_ornt_aff", false]], "inverse() (in module nibabel.quaternions)": [[113, "nibabel.quaternions.inverse", false]], "io_orientation() (in module nibabel.orientations)": [[108, "nibabel.orientations.io_orientation", false]], "is_array_sequence (nibabel.streamlines.array_sequence.arraysequence property)": [[119, "nibabel.streamlines.array_sequence.ArraySequence.is_array_sequence", false]], "is_array_sequence() (in module nibabel.streamlines.array_sequence)": [[119, "nibabel.streamlines.array_sequence.is_array_sequence", false]], "is_bad_version() (nibabel.deprecator.deprecator method)": [[82, "nibabel.deprecator.Deprecator.is_bad_version", false]], "is_correct_format() (nibabel.streamlines.tck.tckfile class method)": [[119, "nibabel.streamlines.tck.TckFile.is_correct_format", false]], "is_correct_format() (nibabel.streamlines.tractogram_file.tractogramfile class method)": [[119, "nibabel.streamlines.tractogram_file.TractogramFile.is_correct_format", false]], "is_correct_format() (nibabel.streamlines.trk.trkfile class method)": [[119, "nibabel.streamlines.trk.TrkFile.is_correct_format", false]], "is_csa (nibabel.nicom.dicomwrappers.siemenswrapper attribute)": [[102, "nibabel.nicom.dicomwrappers.SiemensWrapper.is_csa", false]], "is_csa (nibabel.nicom.dicomwrappers.wrapper attribute)": [[102, "nibabel.nicom.dicomwrappers.Wrapper.is_csa", false]], "is_data_dict() (in module nibabel.streamlines.tractogram)": [[119, "nibabel.streamlines.tractogram.is_data_dict", false]], "is_fancy() (in module nibabel.fileslice)": [[90, "nibabel.fileslice.is_fancy", false]], "is_lazy_dict() (in module nibabel.streamlines.tractogram)": [[119, "nibabel.streamlines.tractogram.is_lazy_dict", false]], "is_mosaic (nibabel.nicom.dicomwrappers.mosaicwrapper attribute)": [[102, "nibabel.nicom.dicomwrappers.MosaicWrapper.is_mosaic", false]], "is_mosaic (nibabel.nicom.dicomwrappers.wrapper attribute)": [[102, "nibabel.nicom.dicomwrappers.Wrapper.is_mosaic", false]], "is_mosaic() (in module nibabel.nicom.csareader)": [[102, "nibabel.nicom.csareader.is_mosaic", false]], "is_multiframe (nibabel.nicom.dicomwrappers.multiframewrapper attribute)": [[102, "nibabel.nicom.dicomwrappers.MultiframeWrapper.is_multiframe", false]], "is_multiframe (nibabel.nicom.dicomwrappers.wrapper attribute)": [[102, "nibabel.nicom.dicomwrappers.Wrapper.is_multiframe", false]], "is_ndarray_of_int_or_bool() (in module nibabel.streamlines.array_sequence)": [[119, "nibabel.streamlines.array_sequence.is_ndarray_of_int_or_bool", false]], "is_proxy 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"module-nibabel.nicom.csareader", false]], "nibabel.nicom.dicomreaders": [[102, "module-nibabel.nicom.dicomreaders", false]], "nibabel.nicom.dicomwrappers": [[102, "module-nibabel.nicom.dicomwrappers", false]], "nibabel.nicom.dwiparams": [[102, "module-nibabel.nicom.dwiparams", false]], "nibabel.nicom.structreader": [[102, "module-nibabel.nicom.structreader", false]], "nibabel.nicom.utils": [[102, "module-nibabel.nicom.utils", false]], "nibabel.nifti1": [[103, "module-nibabel.nifti1", false]], "nibabel.nifti2": [[104, "module-nibabel.nifti2", false]], "nibabel.onetime": [[105, "module-nibabel.onetime", false]], "nibabel.openers": [[106, "module-nibabel.openers", false]], "nibabel.optpkg": [[107, "module-nibabel.optpkg", false]], "nibabel.orientations": [[108, "module-nibabel.orientations", false]], "nibabel.parrec": [[109, "module-nibabel.parrec", false]], "nibabel.pointset": [[110, "module-nibabel.pointset", false]], "nibabel.processing": [[111, "module-nibabel.processing", false]], "nibabel.pydicom_compat": [[112, "module-nibabel.pydicom_compat", false]], "nibabel.quaternions": [[113, "module-nibabel.quaternions", false]], "nibabel.rstutils": [[114, "module-nibabel.rstutils", false]], "nibabel.spaces": [[115, "module-nibabel.spaces", false]], "nibabel.spatialimages": [[116, "module-nibabel.spatialimages", false]], "nibabel.spm2analyze": [[117, "module-nibabel.spm2analyze", false]], "nibabel.spm99analyze": [[118, "module-nibabel.spm99analyze", false]], "nibabel.streamlines": [[119, "module-nibabel.streamlines", false]], "nibabel.streamlines.array_sequence": [[119, "module-nibabel.streamlines.array_sequence", false]], "nibabel.streamlines.header": [[119, "module-nibabel.streamlines.header", false]], "nibabel.streamlines.tck": [[119, "module-nibabel.streamlines.tck", false]], "nibabel.streamlines.tractogram": [[119, "module-nibabel.streamlines.tractogram", false]], "nibabel.streamlines.tractogram_file": [[119, "module-nibabel.streamlines.tractogram_file", false]], 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module nibabel.orientations)": [[108, "nibabel.orientations.ornt_transform", false]], "orthoslicer3d (class in nibabel.viewers)": [[122, "nibabel.viewers.OrthoSlicer3D", false]], "orthoview() (nibabel.spatialimages.spatialimage method)": [[116, "nibabel.spatialimages.SpatialImage.orthoview", false]], "out_dtype (nibabel.arraywriters.arraywriter property)": [[71, "nibabel.arraywriters.ArrayWriter.out_dtype", false]], "pair_magic (nibabel.nifti1.nifti1header attribute)": [[103, "nibabel.nifti1.Nifti1Header.pair_magic", false]], "pair_magic (nibabel.nifti2.nifti2header attribute)": [[104, "nibabel.nifti2.Nifti2Header.pair_magic", false]], "pair_vox_offset (nibabel.nifti1.nifti1header attribute)": [[103, "nibabel.nifti1.Nifti1Header.pair_vox_offset", false]], "pair_vox_offset (nibabel.nifti2.nifti2header attribute)": [[104, "nibabel.nifti2.Nifti2Header.pair_vox_offset", false]], "parcels (nibabel.cifti2.cifti2.cifti2matrixindicesmap property)": [[77, 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nibabel.loadsave)": [[98, "nibabel.loadsave.read_img_data", false]], "read_label() (in module nibabel.freesurfer.io)": [[92, "nibabel.freesurfer.io.read_label", false]], "read_mlist() (in module nibabel.ecat)": [[84, "nibabel.ecat.read_mlist", false]], "read_morph_data() (in module nibabel.freesurfer.io)": [[92, "nibabel.freesurfer.io.read_morph_data", false]], "read_mosaic_dir() (in module nibabel.nicom.dicomreaders)": [[102, "nibabel.nicom.dicomreaders.read_mosaic_dir", false]], "read_mosaic_dwi_dir() (in module nibabel.nicom.dicomreaders)": [[102, "nibabel.nicom.dicomreaders.read_mosaic_dwi_dir", false]], "read_segments() (in module nibabel.fileslice)": [[90, "nibabel.fileslice.read_segments", false]], "read_subheaders() (in module nibabel.ecat)": [[84, "nibabel.ecat.read_subheaders", false]], "read_zt_byte_strings() (in module nibabel.fileutils)": [[91, "nibabel.fileutils.read_zt_byte_strings", false]], "readdir() (nibabel.cmdline.dicomfs.dicomfs method)": [[78, "nibabel.cmdline.dicomfs.DICOMFS.readdir", false]], "readinto() (nibabel.openers.opener method)": [[106, "nibabel.openers.Opener.readinto", false]], "rec2dict() (in module nibabel.volumeutils)": [[123, "nibabel.volumeutils.rec2dict", false]], "recoder (class in nibabel.volumeutils)": [[123, "nibabel.volumeutils.Recoder", false]], "release() (nibabel.cmdline.dicomfs.dicomfs method)": [[78, "nibabel.cmdline.dicomfs.DICOMFS.release", false]], "remove_gifti_data_array() (nibabel.gifti.gifti.giftiimage method)": [[94, "nibabel.gifti.gifti.GiftiImage.remove_gifti_data_array", false]], "remove_gifti_data_array_by_intent() (nibabel.gifti.gifti.giftiimage method)": [[94, "nibabel.gifti.gifti.GiftiImage.remove_gifti_data_array_by_intent", false]], "report (class in nibabel.batteryrunners)": [[72, "nibabel.batteryrunners.Report", false]], "resample_from_to() (in module nibabel.processing)": [[111, "nibabel.processing.resample_from_to", false]], "resample_to_output() (in module nibabel.processing)": [[111, "nibabel.processing.resample_to_output", false]], "rescale_affine() (in module nibabel.affines)": [[68, "nibabel.affines.rescale_affine", false]], "reset() (nibabel.arraywriters.slopearraywriter method)": [[71, "nibabel.arraywriters.SlopeArrayWriter.reset", false]], "reset() (nibabel.arraywriters.slopeinterarraywriter method)": [[71, "nibabel.arraywriters.SlopeInterArrayWriter.reset", false]], "reset() (nibabel.onetime.resetmixin method)": [[105, "nibabel.onetime.ResetMixin.reset", false]], "resetmixin (class in nibabel.onetime)": [[105, "nibabel.onetime.ResetMixin", false]], "reshape() (nibabel.arrayproxy.arrayproxy method)": [[70, "nibabel.arrayproxy.ArrayProxy.reshape", false]], "reshape_dataobj() (in module nibabel.arrayproxy)": [[70, "nibabel.arrayproxy.reshape_dataobj", false]], "rgba (nibabel.cifti2.cifti2.cifti2label property)": [[77, "nibabel.cifti2.cifti2.Cifti2Label.rgba", false]], "rgba (nibabel.gifti.gifti.giftilabel property)": [[94, "nibabel.gifti.gifti.GiftiLabel.rgba", false]], "rotate_vector() (in module nibabel.quaternions)": [[113, "nibabel.quaternions.rotate_vector", false]], "rotation_matrix (nibabel.nicom.dicomwrappers.wrapper property)": [[102, "nibabel.nicom.dicomwrappers.Wrapper.rotation_matrix", false]], "rst_table() (in module nibabel.rstutils)": [[114, "nibabel.rstutils.rst_table", false]], "run_slices() (in module nibabel.benchmarks.bench_fileslice)": [[73, "nibabel.benchmarks.bench_fileslice.run_slices", false]], "rw (nibabel.analyze.analyzeimage attribute)": [[69, "nibabel.analyze.AnalyzeImage.rw", false]], "rw (nibabel.brikhead.afniimage attribute)": [[74, "nibabel.brikhead.AFNIImage.rw", false]], "rw (nibabel.cifti2.cifti2.cifti2image attribute)": [[77, "nibabel.cifti2.cifti2.Cifti2Image.rw", false]], "rw (nibabel.filebasedimages.filebasedimage attribute)": [[87, "nibabel.filebasedimages.FileBasedImage.rw", false]], "rw (nibabel.freesurfer.mghformat.mghimage attribute)": [[92, "nibabel.freesurfer.mghformat.MGHImage.rw", false]], "rw (nibabel.minc1.minc1image attribute)": [[99, "nibabel.minc1.Minc1Image.rw", false]], "rw (nibabel.nifti1.nifti1pair attribute)": [[103, "nibabel.nifti1.Nifti1Pair.rw", false]], "rw (nibabel.parrec.parrecimage attribute)": [[109, "nibabel.parrec.PARRECImage.rw", false]], "rw (nibabel.spm99analyze.spm99analyzeimage attribute)": [[118, "nibabel.spm99analyze.Spm99AnalyzeImage.rw", false]], "safe_get() (in module nibabel.cmdline.utils)": [[78, "nibabel.cmdline.utils.safe_get", false]], "same_file_as() (nibabel.fileholders.fileholder method)": [[88, "nibabel.fileholders.FileHolder.same_file_as", false]], "sanitize() (in module nibabel.cmdline.roi)": [[78, "nibabel.cmdline.roi.sanitize", false]], "save() (in module nibabel.loadsave)": [[98, "nibabel.loadsave.save", false]], "save() (in module nibabel.nifti1)": [[103, "nibabel.nifti1.save", false]], "save() (in module nibabel.nifti2)": [[104, "nibabel.nifti2.save", false]], "save() (in module nibabel.streamlines)": [[119, "nibabel.streamlines.save", false]], "save() (nibabel.streamlines.array_sequence.arraysequence method)": [[119, "nibabel.streamlines.array_sequence.ArraySequence.save", false]], "save() (nibabel.streamlines.tck.tckfile method)": [[119, "nibabel.streamlines.tck.TckFile.save", false]], "save() (nibabel.streamlines.tractogram_file.tractogramfile method)": [[119, "nibabel.streamlines.tractogram_file.TractogramFile.save", false]], "save() (nibabel.streamlines.trk.trkfile method)": [[119, "nibabel.streamlines.trk.TrkFile.save", false]], "scalaraxis (class in nibabel.cifti2.cifti2_axes)": [[77, "nibabel.cifti2.cifti2_axes.ScalarAxis", false]], "scale_factors (nibabel.nicom.dicomwrappers.multiframewrapper property)": [[102, "nibabel.nicom.dicomwrappers.MultiframeWrapper.scale_factors", false]], "scale_factors (nibabel.nicom.dicomwrappers.wrapper property)": [[102, "nibabel.nicom.dicomwrappers.Wrapper.scale_factors", false]], "scaling (nibabel.brikhead.afniarrayproxy property)": [[74, "nibabel.brikhead.AFNIArrayProxy.scaling", false]], "scaling_needed() (nibabel.arraywriters.arraywriter method)": [[71, "nibabel.arraywriters.ArrayWriter.scaling_needed", false]], "scaling_needed() (nibabel.arraywriters.slopearraywriter method)": [[71, "nibabel.arraywriters.SlopeArrayWriter.scaling_needed", false]], "scalingerror (class in nibabel.arraywriters)": [[71, "nibabel.arraywriters.ScalingError", false]], "seek() (nibabel.openers.opener method)": [[106, "nibabel.openers.Opener.seek", false]], "seek_tell() (in module nibabel.volumeutils)": [[123, "nibabel.volumeutils.seek_tell", false]], "serializableimage (class in nibabel.filebasedimages)": [[87, "nibabel.filebasedimages.SerializableImage", false]], "series_signature (nibabel.nicom.dicomwrappers.multiframewrapper property)": [[102, "nibabel.nicom.dicomwrappers.MultiframeWrapper.series_signature", false]], "series_signature (nibabel.nicom.dicomwrappers.siemenswrapper property)": [[102, "nibabel.nicom.dicomwrappers.SiemensWrapper.series_signature", false]], "series_signature (nibabel.nicom.dicomwrappers.wrapper property)": [[102, "nibabel.nicom.dicomwrappers.Wrapper.series_signature", false]], "seriesaxis (class in nibabel.cifti2.cifti2_axes)": [[77, "nibabel.cifti2.cifti2_axes.SeriesAxis", false]], "set_data_dtype() (nibabel.analyze.analyzeheader method)": [[69, "nibabel.analyze.AnalyzeHeader.set_data_dtype", false]], "set_data_dtype() (nibabel.analyze.analyzeimage method)": [[69, "nibabel.analyze.AnalyzeImage.set_data_dtype", false]], "set_data_dtype() (nibabel.cifti2.cifti2.cifti2image method)": [[77, "nibabel.cifti2.cifti2.Cifti2Image.set_data_dtype", false]], "set_data_dtype() (nibabel.freesurfer.mghformat.mghheader method)": [[92, "nibabel.freesurfer.mghformat.MGHHeader.set_data_dtype", false]], "set_data_dtype() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.set_data_dtype", false]], "set_data_dtype() (nibabel.nifti1.nifti1pair method)": [[103, "nibabel.nifti1.Nifti1Pair.set_data_dtype", false]], "set_data_dtype() (nibabel.spatialimages.hasdtype method)": [[116, "nibabel.spatialimages.HasDtype.set_data_dtype", false]], "set_data_dtype() (nibabel.spatialimages.spatialheader method)": [[116, "nibabel.spatialimages.SpatialHeader.set_data_dtype", false]], "set_data_dtype() (nibabel.spatialimages.spatialimage method)": [[116, "nibabel.spatialimages.SpatialImage.set_data_dtype", false]], "set_data_offset() (nibabel.analyze.analyzeheader method)": [[69, "nibabel.analyze.AnalyzeHeader.set_data_offset", false]], "set_data_offset() (nibabel.parrec.parrecheader method)": [[109, "nibabel.parrec.PARRECHeader.set_data_offset", false]], "set_data_shape() (nibabel.analyze.analyzeheader method)": [[69, "nibabel.analyze.AnalyzeHeader.set_data_shape", false]], "set_data_shape() (nibabel.freesurfer.mghformat.mghheader method)": [[92, "nibabel.freesurfer.mghformat.MGHHeader.set_data_shape", false]], "set_data_shape() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.set_data_shape", false]], "set_data_shape() (nibabel.nifti2.nifti2header method)": [[104, "nibabel.nifti2.Nifti2Header.set_data_shape", false]], "set_data_shape() (nibabel.spatialimages.spatialheader method)": [[116, "nibabel.spatialimages.SpatialHeader.set_data_shape", false]], "set_dim_info() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.set_dim_info", false]], "set_filename() (nibabel.filebasedimages.filebasedimage method)": [[87, "nibabel.filebasedimages.FileBasedImage.set_filename", false]], "set_intent() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.set_intent", false]], "set_origin_from_affine() (nibabel.spm99analyze.spm99analyzeheader method)": [[118, "nibabel.spm99analyze.Spm99AnalyzeHeader.set_origin_from_affine", false]], "set_position() (nibabel.viewers.orthoslicer3d method)": [[122, "nibabel.viewers.OrthoSlicer3D.set_position", false]], "set_qform() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.set_qform", false]], "set_qform() (nibabel.nifti1.nifti1pair method)": [[103, "nibabel.nifti1.Nifti1Pair.set_qform", false]], "set_sform() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.set_sform", false]], "set_sform() (nibabel.nifti1.nifti1pair method)": [[103, "nibabel.nifti1.Nifti1Pair.set_sform", false]], "set_slice_duration() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.set_slice_duration", false]], "set_slice_times() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.set_slice_times", false]], "set_slope_inter() (nibabel.analyze.analyzeheader method)": [[69, "nibabel.analyze.AnalyzeHeader.set_slope_inter", false]], "set_slope_inter() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.set_slope_inter", false]], "set_slope_inter() (nibabel.spm99analyze.spmanalyzeheader method)": [[118, "nibabel.spm99analyze.SpmAnalyzeHeader.set_slope_inter", false]], "set_volume_idx() (nibabel.viewers.orthoslicer3d method)": [[122, "nibabel.viewers.OrthoSlicer3D.set_volume_idx", false]], "set_xyzt_units() (nibabel.nifti1.nifti1header method)": [[103, "nibabel.nifti1.Nifti1Header.set_xyzt_units", false]], "set_zooms() (nibabel.analyze.analyzeheader method)": [[69, "nibabel.analyze.AnalyzeHeader.set_zooms", false]], "set_zooms() (nibabel.freesurfer.mghformat.mghheader method)": [[92, "nibabel.freesurfer.mghformat.MGHHeader.set_zooms", false]], "set_zooms() (nibabel.spatialimages.spatialheader method)": [[116, "nibabel.spatialimages.SpatialHeader.set_zooms", false]], "shape (nibabel.arrayproxy.arraylike attribute)": [[70, "nibabel.arrayproxy.ArrayLike.shape", false]], "shape (nibabel.arrayproxy.arrayproxy property)": [[70, "nibabel.arrayproxy.ArrayProxy.shape", false]], "shape (nibabel.dataobj_images.dataobjimage property)": [[80, "nibabel.dataobj_images.DataobjImage.shape", false]], "shape (nibabel.ecat.ecatimage property)": [[84, "nibabel.ecat.EcatImage.shape", false]], "shape (nibabel.ecat.ecatimagearrayproxy property)": [[84, "nibabel.ecat.EcatImageArrayProxy.shape", false]], "shape (nibabel.minc1.mincimagearrayproxy property)": [[99, "nibabel.minc1.MincImageArrayProxy.shape", false]], "shape (nibabel.parrec.parrecarrayproxy property)": [[109, "nibabel.parrec.PARRECArrayProxy.shape", false]], "shape (nibabel.pointset.coordinatearray attribute)": [[110, "nibabel.pointset.CoordinateArray.shape", false]], "shape (nibabel.pointset.gridindices attribute)": [[110, "nibabel.pointset.GridIndices.shape", false]], "shape_zoom_affine() (in module nibabel.volumeutils)": [[123, "nibabel.volumeutils.shape_zoom_affine", false]], "shared_range() (in module nibabel.casting)": [[76, "nibabel.casting.shared_range", false]], "show() (nibabel.viewers.orthoslicer3d method)": [[122, "nibabel.viewers.OrthoSlicer3D.show", false]], "shrink_data() (nibabel.streamlines.array_sequence.arraysequence method)": [[119, "nibabel.streamlines.array_sequence.ArraySequence.shrink_data", false]], "siemens (nibabel.nicom.utils.vendor attribute)": [[102, "nibabel.nicom.utils.Vendor.SIEMENS", false]], "siemenswrapper (class in nibabel.nicom.dicomwrappers)": [[102, "nibabel.nicom.dicomwrappers.SiemensWrapper", false]], "sigma2fwhm() (in module nibabel.processing)": [[111, "nibabel.processing.sigma2fwhm", false]], "single_magic (nibabel.nifti1.nifti1header attribute)": [[103, "nibabel.nifti1.Nifti1Header.single_magic", false]], "single_magic (nibabel.nifti2.nifti2header attribute)": [[104, "nibabel.nifti2.Nifti2Header.single_magic", false]], "single_vox_offset (nibabel.nifti1.nifti1header attribute)": [[103, "nibabel.nifti1.Nifti1Header.single_vox_offset", false]], "single_vox_offset (nibabel.nifti2.nifti2header attribute)": [[104, "nibabel.nifti2.Nifti2Header.single_vox_offset", false]], "size (nibabel.cifti2.cifti2_axes.axis property)": [[77, "nibabel.cifti2.cifti2_axes.Axis.size", false]], "size (nibabel.cifti2.cifti2_axes.seriesaxis attribute)": [[77, "nibabel.cifti2.cifti2_axes.SeriesAxis.size", false]], "sizeof_hdr (nibabel.analyze.analyzeheader attribute)": [[69, "nibabel.analyze.AnalyzeHeader.sizeof_hdr", false]], "sizeof_hdr (nibabel.nifti2.nifti2header attribute)": [[104, "nibabel.nifti2.Nifti2Header.sizeof_hdr", false]], "slice2len() (in module nibabel.fileslice)": [[90, "nibabel.fileslice.slice2len", false]], "slice2outax() (in module nibabel.fileslice)": [[90, "nibabel.fileslice.slice2outax", false]], "slice2volume() (in module nibabel.spaces)": [[115, "nibabel.spaces.slice2volume", false]], "slice_affine() (nibabel.spatialimages.spatialfirstslicer method)": [[116, "nibabel.spatialimages.SpatialFirstSlicer.slice_affine", false]], "slice_indicator (nibabel.nicom.dicomwrappers.wrapper property)": [[102, "nibabel.nicom.dicomwrappers.Wrapper.slice_indicator", false]], "slice_normal (nibabel.nicom.dicomwrappers.siemenswrapper property)": [[102, "nibabel.nicom.dicomwrappers.SiemensWrapper.slice_normal", false]], "slice_normal (nibabel.nicom.dicomwrappers.wrapper property)": [[102, "nibabel.nicom.dicomwrappers.Wrapper.slice_normal", false]], "sliceabledatadict (class in nibabel.streamlines.tractogram)": [[119, "nibabel.streamlines.tractogram.SliceableDataDict", false]], "slicer (nibabel.spatialimages.spatialimage property)": [[116, "nibabel.spatialimages.SpatialImage.slicer", false]], "slicers2segments() (in module nibabel.fileslice)": [[90, "nibabel.fileslice.slicers2segments", false]], "slices_to_series() (in module nibabel.nicom.dicomreaders)": [[102, "nibabel.nicom.dicomreaders.slices_to_series", false]], "slope (nibabel.arrayproxy.arrayproxy property)": [[70, "nibabel.arrayproxy.ArrayProxy.slope", false]], "slope (nibabel.arraywriters.slopearraywriter property)": [[71, "nibabel.arraywriters.SlopeArrayWriter.slope", false]], "slopearraywriter (class in nibabel.arraywriters)": [[71, "nibabel.arraywriters.SlopeArrayWriter", false]], "slopeinterarraywriter (class in nibabel.arraywriters)": [[71, "nibabel.arraywriters.SlopeInterArrayWriter", false]], "smooth_image() (in module nibabel.processing)": [[111, "nibabel.processing.smooth_image", false]], "spatial_axes_first() (in module nibabel.imageclasses)": [[95, "nibabel.imageclasses.spatial_axes_first", false]], "spatialfirstslicer (class in nibabel.spatialimages)": [[116, "nibabel.spatialimages.SpatialFirstSlicer", false]], "spatialheader (class in nibabel.spatialimages)": [[116, "nibabel.spatialimages.SpatialHeader", false]], "spatialimage (class in nibabel.spatialimages)": [[116, "nibabel.spatialimages.SpatialImage", false]], "spatialprotocol (class in nibabel.spatialimages)": [[116, "nibabel.spatialimages.SpatialProtocol", false]], "splitext_addext() (in module nibabel.filename_parser)": [[89, "nibabel.filename_parser.splitext_addext", false]], "spm2analyzeheader (class in nibabel.spm2analyze)": [[117, "nibabel.spm2analyze.Spm2AnalyzeHeader", false]], "spm2analyzeimage (class in nibabel.spm2analyze)": [[117, "nibabel.spm2analyze.Spm2AnalyzeImage", false]], "spm99analyzeheader (class in nibabel.spm99analyze)": [[118, "nibabel.spm99analyze.Spm99AnalyzeHeader", false]], "spm99analyzeimage (class in nibabel.spm99analyze)": [[118, "nibabel.spm99analyze.Spm99AnalyzeImage", false]], "spmanalyzeheader (class in nibabel.spm99analyze)": [[118, "nibabel.spm99analyze.SpmAnalyzeHeader", false]], "squeeze_image() (in module nibabel.funcs)": [[93, "nibabel.funcs.squeeze_image", false]], "startelementhandler() (nibabel.cifti2.parse_cifti2.cifti2parser method)": [[77, "nibabel.cifti2.parse_cifti2.Cifti2Parser.StartElementHandler", false]], "startelementhandler() (nibabel.gifti.parse_gifti_fast.giftiimageparser method)": [[94, "nibabel.gifti.parse_gifti_fast.GiftiImageParser.StartElementHandler", false]], "startelementhandler() (nibabel.xmlutils.xmlparser method)": [[125, 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108, 111, 113, 116, 123], "zibi": 26, "zip": [1, 20, 26], "zipfil": 20, "zlib": [4, 20], "znzlib": 1, "zoom": [1, 2, 68, 69, 84, 92, 99, 100, 103, 104, 116, 123], "zra": 92, "zred": 86, "zrot": 86, "zsind": 40, "zspace": 12, "zst": [73, 89, 106], "zstd": 1, "zstd_def": [65, 106], "zstd_dict": 106, "zvi": [1, 56], "\u00e9tienn": 1}, "titles": ["API Documentation", "NiBabel Development Changelog", "Coordinate systems and affines", "How to add a new image format to nibabel", "Adding test data", "Advanced Testing", "BIAP 0 - Purpose and process", "BIAP1 - Towards immutable images", "BIAP2 - Slicecopy", "BIAP3 - A JSON nifti header extension", "BIAP4 - Merging nibabel and dcmstack", "BIAP5 - A streamlines converter", "BIAP6 - Identifying image axes", "BIAP7 - Loading multiple images", "BIAP8 - Always load image data as floating point", "BIAP9 - The Coordinate Image API", "BIAP X \u2014 Template and Instructions", "BIAPs", "BrainVoyager file formats", "Core Developer Guide", "Principles of data package", "Developer discussions", "NiBabel Developer Guidelines", "Governance and Decision Making", "The nibabel image object", "Developer documentation page", "A guide to making a nibabel release", "Keeping track of whether images have been modified since load", "Roadmap", "Scalefactors and intercepts", "Image use-cases in SPM", "dcm2nii algorithms", "DICOM concepts and implementations", "DICOM fields", "DICOM information", "Introduction to DICOM", "Siemens mosaic format", "DICOM Tags in the NIfTI Header", "Defining the DICOM orientation", "Siemens format DICOM with CSA header", "SPM DICOM conversion", "Getting Started", "Configure git", "Development workflow", "Following the latest source", "Making your own copy (fork) of nibabel", "Git for development", "Install git", "Introduction", "git resources", "Working with <em>nibabel</em> source code", "Maintainer workflow", "Making a patch", "Set up your fork", "Image voxel orientation", "Images and memory", "NiBabel", "Installation", "Copyright and Licenses", "NiBabel Manual", "Radiological vs neurological conventions", "Nibabel images", "Working with NIfTI images", "IPython notebooks for Nibabel project", "Relationship between images and io implementations", "API Reference", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">nibabel</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">_compression</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">affines</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">analyze</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">arrayproxy</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">arraywriters</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">batteryrunners</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">benchmarks</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">brikhead</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">caret</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">casting</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">cifti2</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">cmdline</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">data</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">dataobj_images</span></code>", "<code class=\"xref py py-mod docutils literal notranslate\"><span class=\"pre\">deprecated</span></code>", 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