Model¶

class astropy.modeling.Model(*args, meta=None, name=None, **kwargs)[source]¶

Bases: object

Base class for all models.

This is an abstract class and should not be instantiated directly.

The following initialization arguments apply to the majority of Model subclasses by default (exceptions include specialized utility models like Mapping). Parametric models take all their parameters as arguments, followed by any of the following optional keyword arguments:

Parameters:

namepython:str, optional

A human-friendly name associated with this model instance (particularly useful for identifying the individual components of a compound model).

metapython:dict, optional

An optional dict of user-defined metadata to attach to this model. How this is used and interpreted is up to the user or individual use case.

n_modelspython:int, optional

If given an integer greater than 1, a model set is instantiated instead of a single model. This affects how the parameter arguments are interpreted. In this case each parameter must be given as a list or array–elements of this array are taken along the first axis (or model_set_axis if specified), such that the Nth element is the value of that parameter for the Nth model in the set.

See the section on model sets in the documentation for more details.

model_set_axispython:int, optional

This argument only applies when creating a model set (i.e. n_models > 1). It changes how parameter values are interpreted. Normally the first axis of each input parameter array (properly the 0th axis) is taken as the axis corresponding to the model sets. However, any axis of an input array may be taken as this “model set axis”. This accepts negative integers as well–for example use model_set_axis=-1 if the last (most rapidly changing) axis should be associated with the model sets. Also, model_set_axis=False can be used to tell that a given input should be used to evaluate all the models in the model set.

fixedpython:dict, optional

Dictionary {parameter_name: bool} setting the fixed constraint for one or more parameters. True means the parameter is held fixed during fitting and is prevented from updates once an instance of the model has been created.

Alternatively the fixed property of a parameter may be used to lock or unlock individual parameters.

tiedpython:dict, optional

Dictionary {parameter_name: callable} of parameters which are linked to some other parameter. The dictionary values are callables providing the linking relationship.

Alternatively the tied property of a parameter may be used to set the tied constraint on individual parameters.

boundspython:dict, optional

A dictionary {parameter_name: value} of lower and upper bounds of parameters. Keys are parameter names. Values are a list or a tuple of length 2 giving the desired range for the parameter.

Alternatively the min and max or ~astropy.modeling.Parameter.bounds` properties of a parameter may be used to set bounds on individual parameters.

eqconspython:list, optional

List of functions of length n such that eqcons[j](x0, *args) == 0.0 in a successfully optimized problem.

ineqconspython:list, optional

List of functions of length n such that ieqcons[j](x0, *args) >= 0.0 is a successfully optimized problem.

Examples

>>> from astropy.modeling import models
>>> def tie_center(model):
...         mean = 50 * model.stddev
...         return mean
>>> tied_parameters = {'mean': tie_center}

Specify that 'mean' is a tied parameter in one of two ways:

>>> g1 = models.Gaussian1D(amplitude=10, mean=5, stddev=.3,
...                        tied=tied_parameters)

or

>>> g1 = models.Gaussian1D(amplitude=10, mean=5, stddev=.3)
>>> g1.mean.tied
False
>>> g1.mean.tied = tie_center
>>> g1.mean.tied
<function tie_center at 0x...>

Fixed parameters:

>>> g1 = models.Gaussian1D(amplitude=10, mean=5, stddev=.3,
...                        fixed={'stddev': True})
>>> g1.stddev.fixed
True

or

>>> g1 = models.Gaussian1D(amplitude=10, mean=5, stddev=.3)
>>> g1.stddev.fixed
False
>>> g1.stddev.fixed = True
>>> g1.stddev.fixed
True

Attributes Summary

`bbox_with_units`
`bounding_box`	A `tuple` of length `n_inputs` defining the bounding box limits, or raise `NotImplementedError` for no bounding_box.
`bounds`	A `dict` mapping parameter names to their upper and lower bounds as `(min, max)` tuples or `[min, max]` lists.
`cov_matrix`	Fitter should set covariance matrix, if available.
`eqcons`	List of parameter equality constraints.
`fittable`
`fixed`	A `dict` mapping parameter names to their fixed constraint.
`has_user_bounding_box`	A flag indicating whether or not a custom bounding_box has been assigned to this model by a user, via assignment to `model.bounding_box`.
`has_user_inverse`	A flag indicating whether or not a custom inverse model has been assigned to this model by a user, via assignment to `model.inverse`.
`ineqcons`	List of parameter inequality constraints.
`input_units`	This property is used to indicate what units or sets of units the evaluate method expects, and returns a dictionary mapping inputs to units (or `None` if any units are accepted).
`input_units_allow_dimensionless`	Allow dimensionless input (and corresponding output).
`input_units_equivalencies`
`input_units_strict`	Enforce strict units on inputs to evaluate.
`inputs`
`inverse`	Returns a new `Model` instance which performs the inverse transform, if an analytic inverse is defined for this model.
`linear`
`meta`	A dict-like object to store optional information.
`model_constraints`	Primarily for informational purposes, these are the types of constraints that constrain model evaluation.
`model_set_axis`	The index of the model set axis--that is the axis of a parameter array that pertains to which model a parameter value pertains to--as specified when the model was initialized.
`n_inputs`	The number of inputs.
`n_outputs`	The number of outputs.
`n_submodels`	Return the number of components in a single model, which is obviously 1.
`name`	User-provided name for this model instance.
`outputs`
`param_names`	Names of the parameters that describe models of this type.
`param_sets`	Return parameters as a pset.
`parameter_constraints`	Primarily for informational purposes, these are the types of constraints that can be set on a model's parameters.
`parameters`	A flattened array of all parameter values in all parameter sets.
`return_units`	This property is used to indicate what units or sets of units the output of evaluate should be in, and returns a dictionary mapping outputs to units (or `None` if any units are accepted).
`separable`	A flag indicating whether a model is separable.
`standard_broadcasting`
`stds`	Standard deviation of parameters, if covariance matrix is available.
`sync_constraints`	This is a boolean property that indicates whether or not accessing constraints automatically check the constituent models current values.
`tied`	A `dict` mapping parameter names to their tied constraint.
`uses_quantity`	True if this model has been created with `Quantity` objects or if there are no parameters.

Methods Summary

`__call__`(args, *kwargs)	Evaluate this model using the given input(s) and the parameter values that were specified when the model was instantiated.
`coerce_units`([input_units, return_units, ...])	Attach units to this (unitless) model.
`copy`()	Return a copy of this model.
`deepcopy`()	Return a deep copy of this model.
`evaluate`(args, *kwargs)	Evaluate the model on some input variables.
`get_bounding_box`([with_bbox])	Return the `bounding_box` of a model if it exists or `None` otherwise.
`has_inverse`()	Returns True if the model has an analytic or user inverse defined.
`input_shape`(inputs)	Get input shape for bounding_box evaluation
`output_units`(**kwargs)	Return a dictionary of output units for this model given a dictionary of fitting inputs and outputs
`prepare_inputs`(*inputs[, model_set_axis, ...])	This method is used in `__call__` to ensure that all the inputs to the model can be broadcast into compatible shapes (if one or both of them are input as arrays), particularly if there are more than one parameter sets.
`prepare_outputs`(broadcasted_shapes, ...)
`rename`([name, inputs, outputs])	Return a copy of this model with a new name.
`render`([out, coords])	Evaluate a model at fixed positions, respecting the `bounding_box`.
`set_slice_args`(*args)
`strip_units_from_tree`()
`sum_of_implicit_terms`(args, *kwargs)	Evaluate the sum of any implicit model terms on some input variables.
`with_units_from_data`(**kwargs)	Return an instance of the model which has units for which the parameter values are compatible with the data units specified.
`without_units_for_data`(**kwargs)	Return an instance of the model for which the parameter values have been converted to the right units for the data, then the units have been stripped away.

Attributes Documentation

bbox_with_units¶

bounding_box¶

A tuple of length n_inputs defining the bounding box limits, or raise NotImplementedError for no bounding_box.

The default limits are given by a bounding_box property or method defined in the class body of a specific model. If not defined then this property just raises NotImplementedError by default (but may be assigned a custom value by a user). bounding_box can be set manually to an array-like object of shape (model.n_inputs, 2). For further usage, see Efficient Model Rendering with Bounding Boxes

The limits are ordered according to the numpy 'C' indexing convention, and are the reverse of the model input order, e.g. for inputs ('x', 'y', 'z'), bounding_box is defined:

for 1D: (x_low, x_high)
for 2D: ((y_low, y_high), (x_low, x_high))
for 3D: ((z_low, z_high), (y_low, y_high), (x_low, x_high))

Examples

Setting the bounding_box limits for a 1D and 2D model:

>>> from astropy.modeling.models import Gaussian1D, Gaussian2D
>>> model_1d = Gaussian1D()
>>> model_2d = Gaussian2D(x_stddev=1, y_stddev=1)
>>> model_1d.bounding_box = (-5, 5)
>>> model_2d.bounding_box = ((-6, 6), (-5, 5))

Setting the bounding_box limits for a user-defined 3D custom_model:

>>> from astropy.modeling.models import custom_model
>>> def const3d(x, y, z, amp=1):
...    return amp
...
>>> Const3D = custom_model(const3d)
>>> model_3d = Const3D()
>>> model_3d.bounding_box = ((-6, 6), (-5, 5), (-4, 4))

To reset bounding_box to its default limits just delete the user-defined value–this will reset it back to the default defined on the class:

>>> del model_1d.bounding_box

To disable the bounding box entirely (including the default), set bounding_box to None:

>>> model_1d.bounding_box = None
>>> model_1d.bounding_box  
Traceback (most recent call last):
NotImplementedError: No bounding box is defined for this model
(note: the bounding box was explicitly disabled for this model;
use `del model.bounding_box` to restore the default bounding box,
if one is defined for this model).

bounds¶: A dict mapping parameter names to their upper and lower bounds as (min, max) tuples or [min, max] lists.

cov_matrix¶: Fitter should set covariance matrix, if available.

eqcons¶: List of parameter equality constraints.

fittable = False¶

fixed¶: A dict mapping parameter names to their fixed constraint.

has_user_bounding_box¶: A flag indicating whether or not a custom bounding_box has been assigned to this model by a user, via assignment to model.bounding_box.

has_user_inverse¶: A flag indicating whether or not a custom inverse model has been assigned to this model by a user, via assignment to model.inverse.

ineqcons¶: List of parameter inequality constraints.

input_units¶

This property is used to indicate what units or sets of units the evaluate method expects, and returns a dictionary mapping inputs to units (or None if any units are accepted).

Model sub-classes can also use function annotations in evaluate to indicate valid input units, in which case this property should not be overridden since it will return the input units based on the annotations.

input_units_allow_dimensionless¶: Allow dimensionless input (and corresponding output). If this is True, input values to evaluate will gain the units specified in input_units. If this is a dictionary then it should map input name to a bool to allow dimensionless numbers for that input. Only has an effect if input_units is defined.

input_units_equivalencies = None¶

input_units_strict¶: Enforce strict units on inputs to evaluate. If this is set to True, input values to evaluate will be in the exact units specified by input_units. If the input quantities are convertible to input_units, they are converted. If this is a dictionary then it should map input name to a bool to set strict input units for that parameter.

inputs¶

inverse¶

Returns a new Model instance which performs the inverse transform, if an analytic inverse is defined for this model.

Even on models that don’t have an inverse defined, this property can be set with a manually-defined inverse, such a pre-computed or experimentally determined inverse (often given as a PolynomialModel, but not by requirement).

A custom inverse can be deleted with del model.inverse. In this case the model’s inverse is reset to its default, if a default exists (otherwise the default is to raise NotImplementedError).

Note to authors of Model subclasses: To define an inverse for a model simply override this property to return the appropriate model representing the inverse. The machinery that will make the inverse manually-overridable is added automatically by the base class.

linear = True¶

meta¶: A dict-like object to store optional information.

model_constraints = ('eqcons', 'ineqcons')¶: Primarily for informational purposes, these are the types of constraints that constrain model evaluation.

model_set_axis¶

The index of the model set axis–that is the axis of a parameter array that pertains to which model a parameter value pertains to–as specified when the model was initialized.

See the documentation on Model Sets for more details.

n_inputs¶: The number of inputs.

n_outputs¶: The number of outputs.

n_submodels¶: Return the number of components in a single model, which is obviously 1.

name¶: User-provided name for this model instance.

outputs¶

param_names = ()¶

Names of the parameters that describe models of this type.

The parameters in this tuple are in the same order they should be passed in when initializing a model of a specific type. Some types of models, such as polynomial models, have a different number of parameters depending on some other property of the model, such as the degree.

When defining a custom model class the value of this attribute is automatically set by the Parameter attributes defined in the class body.

param_sets¶

Return parameters as a pset.

This is a list with one item per parameter set, which is an array of that parameter’s values across all parameter sets, with the last axis associated with the parameter set.

parameter_constraints = ('fixed', 'tied', 'bounds')¶: Primarily for informational purposes, these are the types of constraints that can be set on a model’s parameters.

parameters¶

A flattened array of all parameter values in all parameter sets.

Fittable parameters maintain this list and fitters modify it.

return_units¶

This property is used to indicate what units or sets of units the output of evaluate should be in, and returns a dictionary mapping outputs to units (or None if any units are accepted).

Model sub-classes can also use function annotations in evaluate to indicate valid output units, in which case this property should not be overridden since it will return the return units based on the annotations.

separable¶: A flag indicating whether a model is separable.

standard_broadcasting = True¶

stds¶: Standard deviation of parameters, if covariance matrix is available.

sync_constraints¶: This is a boolean property that indicates whether or not accessing constraints automatically check the constituent models current values. It defaults to True on creation of a model, but for fitting purposes it should be set to False for performance reasons.

tied¶: A dict mapping parameter names to their tied constraint.

uses_quantity¶

True if this model has been created with Quantity objects or if there are no parameters.

This can be used to determine if this model should be evaluated with Quantity or regular floats.

Methods Documentation

__call__(*args, **kwargs)[source]¶: Evaluate this model using the given input(s) and the parameter values that were specified when the model was instantiated.

coerce_units(input_units=None, return_units=None, input_units_equivalencies=None, input_units_allow_dimensionless=False)[source]¶

Attach units to this (unitless) model.

Parameters:

input_unitspython:dict or python:tuple, optional: Input units to attach. If dict, each key is the name of a model input, and the value is the unit to attach. If tuple, the elements are units to attach in order corresponding to Model.inputs.
return_unitspython:dict or python:tuple, optional: Output units to attach. If dict, each key is the name of a model output, and the value is the unit to attach. If tuple, the elements are units to attach in order corresponding to Model.outputs.
input_units_equivalenciespython:dict, optional: Default equivalencies to apply to input values. If set, this should be a dictionary where each key is a string that corresponds to one of the model inputs.
input_units_allow_dimensionlessbool or python:dict, optional: Allow dimensionless input. If this is True, input values to evaluate will gain the units specified in input_units. If this is a dictionary then it should map input name to a bool to allow dimensionless numbers for that input.

Returns:

CompoundModel: A CompoundModel composed of the current model plus UnitsMapping model(s) that attach the units.

Raises:

ValueError: If the current model already has units.

Examples

Wrapping a unitless model to require and convert units:

>>> from astropy.modeling.models import Polynomial1D
>>> from astropy import units as u
>>> poly = Polynomial1D(1, c0=1, c1=2)
>>> model = poly.coerce_units((u.m,), (u.s,))
>>> model(u.Quantity(10, u.m))  
<Quantity 21. s>
>>> model(u.Quantity(1000, u.cm))  
<Quantity 21. s>
>>> model(u.Quantity(10, u.cm))  
<Quantity 1.2 s>

Wrapping a unitless model but still permitting unitless input:

>>> from astropy.modeling.models import Polynomial1D
>>> from astropy import units as u
>>> poly = Polynomial1D(1, c0=1, c1=2)
>>> model = poly.coerce_units((u.m,), (u.s,), input_units_allow_dimensionless=True)
>>> model(u.Quantity(10, u.m))  
<Quantity 21. s>
>>> model(10)  
<Quantity 21. s>

copy()[source]¶

Return a copy of this model.

Uses a deep copy so that all model attributes, including parameter values, are copied as well.

deepcopy()[source]¶: Return a deep copy of this model.

abstract evaluate(*args, **kwargs)[source]¶: Evaluate the model on some input variables.

get_bounding_box(with_bbox=True)[source]¶

Return the bounding_box of a model if it exists or None otherwise.

Parameters:

with_bbox: The value of the with_bounding_box keyword argument when calling the model. Default is True for usage when looking up the model’s bounding_box without risk of error.

has_inverse()[source]¶: Returns True if the model has an analytic or user inverse defined.

input_shape(inputs)[source]¶: Get input shape for bounding_box evaluation

output_units(**kwargs)[source]¶

Return a dictionary of output units for this model given a dictionary of fitting inputs and outputs

The input and output Quantity objects should be given as keyword arguments.

Notes

This method is needed in order to be able to fit models with units in the parameters, since we need to temporarily strip away the units from the model during the fitting (which might be done by e.g. scipy functions).

This method will force extra model evaluations, which maybe computationally expensive. To avoid this, one can add a return_units property to the model, see return_units.

prepare_inputs(*inputs, model_set_axis=None, equivalencies=None, **kwargs)[source]¶: This method is used in __call__ to ensure that all the inputs to the model can be broadcast into compatible shapes (if one or both of them are input as arrays), particularly if there are more than one parameter sets. This also makes sure that (if applicable) the units of the input will be compatible with the evaluate method.

prepare_outputs(broadcasted_shapes, *outputs, **kwargs)[source]¶

classmethod rename(name=None, inputs=None, outputs=None)[source]¶: Return a copy of this model with a new name.

render(out=None, coords=None)[source]¶

Evaluate a model at fixed positions, respecting the bounding_box.

The key difference relative to evaluating the model directly is that this method is limited to a bounding box if the Model.bounding_box attribute is set.

Parameters:

outnumpy.ndarray, optional: An array that the evaluated model will be added to. If this is not given (or given as None), a new array will be created.
coordsnumpy:array_like, optional: An array to be used to translate from the model’s input coordinates to the out array. It should have the property that self(coords) yields the same shape as out. If out is not specified, coords will be used to determine the shape of the returned array. If this is not provided (or None), the model will be evaluated on a grid determined by Model.bounding_box.

Returns:

outnumpy.ndarray: The model added to out if out is not None, or else a new array from evaluating the model over coords. If out and coords are both None, the returned array is limited to the Model.bounding_box limits. If Model.bounding_box is None, arr or coords must be passed.

Raises:

ValueError: If coords are not given and the the Model.bounding_box of this model is not set.

Examples

Efficient Model Rendering with Bounding Boxes

set_slice_args(*args)[source]¶

strip_units_from_tree()[source]¶

sum_of_implicit_terms(*args, **kwargs)[source]¶: Evaluate the sum of any implicit model terms on some input variables. This includes any fixed terms used in evaluating a linear model that do not have corresponding parameters exposed to the user. The prototypical case is astropy.modeling.functional_models.Shift, which corresponds to a function y = a + bx, where b=1 is intrinsically fixed by the type of model, such that sum_of_implicit_terms(x) == x. This method is needed by linear fitters to correct the dependent variable for the implicit term(s) when solving for the remaining terms (ie. a = y - bx).

with_units_from_data(**kwargs)[source]¶

Return an instance of the model which has units for which the parameter values are compatible with the data units specified.

The input and output Quantity objects should be given as keyword arguments.

Notes

This method is needed in order to be able to fit models with units in the parameters, since we need to temporarily strip away the units from the model during the fitting (which might be done by e.g. scipy functions).

The units that the parameters will gain are not necessarily the units of the input data, but are derived from them. Model subclasses that want fitting to work in the presence of quantities need to define a _parameter_units_for_data_units method that takes the input and output units (as two dictionaries) and returns a dictionary giving the target units for each parameter.

without_units_for_data(**kwargs)[source]¶

Return an instance of the model for which the parameter values have been converted to the right units for the data, then the units have been stripped away.

The input and output Quantity objects should be given as keyword arguments.

Notes

This method is needed in order to be able to fit models with units in the parameters, since we need to temporarily strip away the units from the model during the fitting (which might be done by e.g. scipy functions).

The units that the parameters should be converted to are not necessarily the units of the input data, but are derived from them. Model subclasses that want fitting to work in the presence of quantities need to define a _parameter_units_for_data_units method that takes the input and output units (as two dictionaries) and returns a dictionary giving the target units for each parameter.

Navigation

Model¶