.. currentmodule:: asdf.extension .. _extending_converters: ========== Converters ========== The `~asdf.extension.Converter` interface defines a mapping between tagged objects in the ASDF tree and their corresponding Python object(s). Typically a Converter will map one YAML tag to one Python type, but the interface also supports many-to-one and many-to-many mappings. A Converter provides the software support for a tag and is responsible for both converting from parsed YAML to more complex Python objects and vice versa. The Converter interface ======================= Every Converter implementation must provide two required properties and two required methods: `Converter.tags` - a list of tag URIs or URI patterns handled by the converter. Patterns may include the wildcard character ``*``, which matches any sequence of characters up to a ``/``, or ``**``, which matches any sequence of characters. The `~asdf.util.uri_match` method can be used to test URI patterns. `Converter.types` - a list of Python types or fully-qualified Python type names handled by the converter. For strings, the private or public path can be used. For example, if class ``Foo`` is implemented in ``example_package.foo.Foo`` but imported as ``example_package.Foo`` for convenience either ``example_package.foo.Foo`` or ``example_package.Foo`` can be used. As most libraries do not consider moving where a class is implemented it is preferred to use the "public" location where the class is imported (in this example ``example_package.Foo``). The string type name is recommended over a type object for performance reasons, see :ref:`extending_converters_performance`. `Converter.to_yaml_tree` - a method that accepts a complex Python object and returns a simple node object (typically a `dict`) suitable for serialization to YAML. The node is permitted to contain nested complex objects; these will in turn be passed to other ``to_yaml_tree`` methods in other Converters. `Converter.from_yaml_tree` - a method that accepts a simple node object from parsed YAML and returns the appropriate complex Python object. For a non-lazy-tree, nested nodes in the received node will have already been converted to complex objects by other calls to ``from_yaml_tree`` methods, except where reference cycles are present -- see :ref:`extending_converters_reference_cycles` for information on how to handle that situation. For a ``lazy_tree`` (see `asdf.open`) the node will contain `asdf.lazy_nodes` instances which act like dicts and lists but convert child objects only when they are accessed. Additionally, the Converter interface includes a method that must be implemented when some logic is required to select the tag to assign to a ``to_yaml_tree`` result: `Converter.select_tag` - an optional method that accepts a complex Python object and a list candidate tags and returns the tag that should be used to serialize the object. `Converter.lazy` - a boolean attribute indicating if this converter accepts "lazy" objects (those defined in `asdf.lazy_nodes`). This is mostly useful for container-like classes (where the "lazy" objects can defer conversion of contained objects until they are accessed). If a converter produces a generator lazy should be set to ``False`` as asdf will need to generate nodes further out the branch to fully resolve the object returned from the generator. A simple example ================ Say we have a Python class, ``Rectangle``, that we wish to serialize to an ASDF file. A ``Rectangle`` instance has two attributes, width and height, and a convenient method that computes its area: .. code-block:: python # in module example_package.shapes class Rectangle: def __init__(self, width, height): self.width = width self.height = height def get_area(self): return self.width * self.height We'll need to designate a tag URI to represent this object's type in the ASDF tree -- let's use ``asdf://example.com/example-project/tags/rectangle-1.0.0``. Here is a simple Converter implementation for this type and tag: .. code-block:: python from asdf.extension import Converter class RectangleConverter(Converter): tags = ["asdf://example.com/shapes/tags/rectangle-1.0.0"] types = ["example_package.shapes.Rectangle"] def to_yaml_tree(self, obj, tag, ctx): return { "width": obj.width, "height": obj.height, } def from_yaml_tree(self, node, tag, ctx): from example_package.shapes import Rectangle return Rectangle(node["width"], node["height"]) Note that import of the ``Rectangle`` class has been deferred to inside the ``from_yaml_tree`` method. This is a performance consideration that is discussed in :ref:`extending_converters_performance`. In order to use this Converter, we'll need to create a simple extension around it and install that extension: .. code-block:: python import asdf from asdf.extension import Extension class ShapesExtension(Extension): extension_uri = "asdf://example.com/shapes/extensions/shapes-1.0.0" converters = [RectangleConverter()] tags = ["asdf://example.com/shapes/tags/rectangle-1.0.0"] asdf.get_config().add_extension(ShapesExtension()) Now we can include a Rectangle object in an `~asdf.AsdfFile` tree and write out a file: .. code-block:: python with asdf.AsdfFile() as af: af["rect"] = Rectangle(5, 4) af.write_to("test.asdf") The portion of the ASDF file that represents the rectangle looks like this: .. code-block:: yaml rect: ! {height: 4, width: 5} Multiple tags ============= Now say we want to map our one Rectangle class to one of two tags, either rectangle-1.0.0 or square-1.0.0. We'll need to add square-1.0.0 to the converter's list of tags and implement a `select_tag` method: .. code-block:: python RETANGLE_TAG = "asdf://example.com/shapes/tags/rectangle-1.0.0" SQUARE_TAG = "asdf://example.com/shapes/tags/square-1.0.0" class RectangleConverter(Converter): tags = [RECTANGLE_TAG, SQUARE_TAG] types = ["example_package.shapes.Rectangle"] def select_tag(self, obj, tags, ctx): if obj.width == obj.height: return SQUARE_TAG else: return RECTANGLE_TAG def to_yaml_tree(self, obj, tag, ctx): if tag == SQUARE_TAG: return { "side_length": obj.width, } else: return { "width": obj.width, "height": obj.height, } def from_yaml_tree(self, node, tag, ctx): from example_package.shapes import Rectangle if tag == SQUARE_TAG: return Rectangle(node["side_length"], node["side_length"]) else: return Rectangle(node["width"], node["height"]) .. _extending_converters_deferral: Deferring to another converter ============================== Converters only support the exact types listed in `Converter.types`. When a supported type is subclassed the extension will need to be updated to support the new subclass. There are a few options for supporting subclasses. If serialization of the subclass needs to differ from the superclass a new Converter, tag and schema should be defined. If the subclass can be treated the same as the superclass (specifically if subclass instances can be serialized as the superclass) then the subclass can be added to the existing `Converter.types`. Note that adding the subclass to the supported types (without making other changes to the Converter) will result in subclass instances using the same tag as the superclass. This means that any instances created during deserialization will always be of the superclass (subclass instances will never be read from an ASDF file). Another option (useful when modifying the existing Converter is not convenient) is to define a Converter that does not tag the subclass instance being serialized and instead defers to the existing Converter. Deferral is triggered by returning ``None`` from `Converter.select_tag` and implementing `Converter.to_yaml_tree` to convert the subclass instance into an instance of the (supported) superclass. For example, using the example ``Rectangle`` class above, let's say we have another class, ``AspectRectangle``, that represents a rectangle as a height and aspect ratio. We know we never need to deserialize this class for our uses and are ok with always reading ``Rectangle`` instances after saving ``AspectRectangle`` instances. In this case we can define a Converter for ``AspectRectangle`` that converts instances to ``Rectangle`` and defers to the ``RectangleConverter``. .. code-block:: python class AspectRectangle(Rectangle): def __init__(self, height, ratio): self.height = height self.ratio = ratio def get_area(self): width = self.height * self.ratio return width * self.height class AspectRectangleConverter(Converter): tags = [] types = [AspectRectangle] def select_tag(self, obj, tags, ctx): return None # defer to a different Converter def to_yaml_tree(self, obj, tag, ctx): # convert the instance of AspectRectangle (obj) to # a supported type (Rectangle) return Rectangle(obj.height * obj.ratio, obj.height) def from_yaml_tree(self, node, tag, ctx): raise NotImplementedError() Just like a non-deferring Converter this Converter will need to be added to an Extension and registered with asdf. .. _extending_converters_reference_cycles: Reference cycles ================ Special considerations must be made when deserializing a tagged object that contains a reference to itself among its descendants. Consider a `fractions.Fraction` subclass that maintains a reference to its multiplicative inverse: .. code-block:: python # in the example_project.fractions module class FractionWithInverse(fractions.Fraction): def __init__(self, *args, **kwargs): self._inverse = None @property def inverse(self): return self._inverse @inverse.setter def inverse(self, value): self._inverse = value The inverse of the inverse of a fraction is the fraction itself, we might wish to construct the objects in the following way: .. code-block:: python f1 = FractionWithInverse(3, 5) f2 = FractionWithInverse(5, 3) f1.inverse = f2 f2.inverse = f1 Which creates an "infinite loop" between the two fractions. An ordinary Converter wouldn't be able to deserialize this, since each fraction requires that the other be deserialized first! Let's see what happens when we define our ``from_yaml_tree`` method in a naive way: .. code-block:: python class FractionWithInverseConverter(Converter): tags = ["asdf://example.com/fractions/tags/fraction-1.0.0"] types = ["example_project.fractions.FractionWithInverse"] def to_yaml_tree(self, obj, tag, ctx): return { "numerator": obj.width, "denominator": obj.height, "inverse": obj.inverse, } def from_yaml_tree(self, node, tag, ctx): from example_project.fractions import FractionWithInverse obj = FractionWithInverse(tree["numerator"], tree["denominator"]) obj.inverse = tree["inverse"] return obj After adding this Converter to an Extension and installing it, the fraction will serialize correctly: .. code-block:: python with asdf.AsdfFile({"fraction": f1}) as af: af.write_to("with_inverse.asdf") But upon deserialization, we notice a problem: .. code-block:: python with asdf.open("with_inverse.asdf") as af: reconstituted_f1 = af["fraction"] assert reconstituted_f1.inverse.inverse is asdf.treeutil.PendingValue The presence of `~asdf.treeutil._PendingValue` is asdf's way of telling us that the value corresponding to the key ``inverse`` was not fully deserialized at the time that we retrieved it. We can handle this situation by making our ``from_yaml_tree`` a generator function: .. code-block:: python def from_yaml_tree(self, node, tag, ctx): from example_project.fractions import FractionWithInverse obj = FractionWithInverse(tree["numerator"], tree["denominator"]) yield obj obj.inverse = tree["inverse"] The generator version of ``from_yaml_tree`` yields the partially constructed ``FractionWithInverse`` object before setting its inverse property. This allows `asdf` to proceed to constructing the inverse ``FractionWithInverse`` object, and resume the original ``from_yaml_tree`` execution only when the inverse is actually available. With this modification we can successfully deserialize our ASDF file: .. code-block:: python with asdf.open("with_inverse.asdf") as af: reconstituted_f1 = ff["fraction"] assert reconstituted_f1.inverse.inverse is reconstituted_f1 .. _extending_converter_block_storage: Block storage ============= As described above :ref:`extending_converters` can return complex objects that will be passed to other Converters. If a Converter returns a ndarray, asdf will recognize this array and store it in an ASDF block. This is the easiest and preferred means of storing data in ASDF blocks. For applications that require more flexibility, Converters can control block storage through use of the `asdf.extension.SerializationContext` provided as an argument to `Converter.to_yaml_tree` `Converter.from_yaml_tree` and ``Converter.select_tag``. It is helpful to first review some details of how asdf :ref:`stores block `. Blocks are stored sequentially within a ASDF file following the YAML tree. During reads and writes, asdf will need to know the index of the block a Converter would like to use to read or write the correct block. However, the index used for reading might not be the same index for writing if the tree was modified or the file is being written to a new location. During serialization and deserialization, asdf will associate each object with the accessed block during `Converter.from_yaml_tree` and `Converter.to_yaml_tree`. .. note:: Converters using multiple blocks are slightly more complicated. See: :ref:`extending_converter_multiple_block_storage` A simple example of a Converter using block storage to store the ``payload`` for ``BlockData`` object instances is as follows: .. runcode:: import asdf import numpy as np from asdf.extension import Converter, Extension class BlockData: def __init__(self, payload): self.payload = payload class BlockConverter(Converter): tags = ["asdf://somewhere.org/tags/block_data-1.0.0"] types = [BlockData] def to_yaml_tree(self, obj, tag, ctx): block_index = ctx.find_available_block_index( lambda: np.ndarray(len(obj.payload), dtype="uint8", buffer=obj.payload), ) return {"block_index": block_index} def from_yaml_tree(self, node, tag, ctx): block_index = node["block_index"] data_callback = ctx.get_block_data_callback(block_index) obj = BlockData(data_callback()) return obj class BlockExtension(Extension): tags = ["asdf://somewhere.org/tags/block_data-1.0.0"] converters = [BlockConverter()] extension_uri = "asdf://somewhere.org/extensions/block_data-1.0.0" with asdf.config_context() as cfg: cfg.add_extension(BlockExtension()) ff = asdf.AsdfFile({"example": BlockData(b"abcdefg")}) ff.write_to("block_converter_example.asdf") .. asdf:: block_converter_example.asdf During read, `Converter.from_yaml_tree` will be called. Within this method the Converter can prepare to access a block by calling ``SerializationContext.get_block_data_callback``. This will return a function that when called will return the contents of the block (to support lazy loading without keeping a reference to the ``SerializationContext`` (which is meant to be a short lived and lightweight object). During write, `Converter.to_yaml_tree` will be called. The Converter can use ``SerializationContext.find_available_block_index`` to find the location of an available block for writing. The data to be written to the block can be provided as an ``ndarray`` or a callable function that will return a ``ndarray`` (note that it is possible this callable function will be called multiple times and the developer should cache results from any non-repeatable sources). .. _extending_converter_multiple_block_storage: Converters using multiple blocks -------------------------------- As discussed above, while serializing and deserializing objects that use one block, asdf will watch which block is accessed by ``find_available_block_index`` and ``get_block_data_callback`` and associate the block with the converted object. This association allows asdf to map read and write blocks during updates of ASDF files. An object that uses multiple blocks must provide a unique key for each block it uses. These keys are generated using ``SerializationContext.generate_block_key`` and must be stored by the extension code. These keys must be resupplied to the converter when writing an object that was read from an ASDF file. .. runcode:: import asdf import numpy as np from asdf.extension import Converter, Extension class MultiBlockData: def __init__(self, data): self.data = data self.keys = [] class MultiBlockConverter(Converter): tags = ["asdf://somewhere.org/tags/multi_block_data-1.0.0"] types = [MultiBlockData] def to_yaml_tree(self, obj, tag, ctx): if not len(obj.keys): obj.keys = [ctx.generate_block_key() for _ in obj.data] indices = [ctx.find_available_block_index(d, k) for d, k in zip(obj.data, obj.keys)] return { "indices": indices, } def from_yaml_tree(self, node, tag, ctx): indices = node["indices"] keys = [ctx.generate_block_key() for _ in indices] cbs = [ctx.get_block_data_callback(i, k) for i, k in zip(indices, keys)] obj = MultiBlockData([cb() for cb in cbs]) obj.keys = keys return obj class MultiBlockExtension(Extension): tags = ["asdf://somewhere.org/tags/multi_block_data-1.0.0"] converters = [MultiBlockConverter()] extension_uri = "asdf://somewhere.org/extensions/multi_block_data-1.0.0" with asdf.config_context() as cfg: cfg.add_extension(MultiBlockExtension()) obj = MultiBlockData([np.arange(3, dtype="uint8") + i for i in range(3)]) ff = asdf.AsdfFile({"example": obj}) ff.write_to("multi_block_converter_example.asdf") .. asdf:: multi_block_converter_example.asdf .. _extending_converters_performance: Entry point performance considerations ====================================== For the good of `asdf` users everywhere, it's important that entry point methods load as quickly as possible. All extensions must be loaded before reading an ASDF file, and therefore all converters are created as well. Any converter module or ``__init__`` method that lingers will introduce a delay to the initial call to `asdf.open`. For that reason, we recommend that converter authors minimize the number of imports that occur in the module containing the Converter implementation, and defer imports of serializable types to within the ``from_yaml_tree`` method. This will prevent the type from ever being imported when reading ASDF files that do not contain the associated tag.