Package org.biojava.nbio.structure.scop

Class ScopDescription

java.lang.Object
org.biojava.nbio.structure.scop.ScopDescription
All Implemented Interfaces:
Serializable, Cloneable
public class ScopDescription extends Object implements Serializable, Cloneable
Contains data from dir.des.scop.txt_1.75

e.g 

 SunID  Cat     Class           Name    Description
 -----  ---     -----           ----    -----------
 26154  px      b.47.1.2        d1nrs.1 1nrs L:,H:
 125030 px      b.47.1.2        d1zgia1 1zgi A:1A-245
Author:
Andreas Prlic
See Also:

  • Constructor Details

    • ScopDescription

      public ScopDescription()

  • Method Details

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • getSunID

      public int getSunID()

    • setSunID

      public void setSunID(int sunID)

    • getCategory

      public ScopCategory getCategory()

    • setCategory

      public void setCategory(ScopCategory category)

    • getClassificationId

      public String getClassificationId()

    • setClassificationId

      public void setClassificationId(String classificationId)

    • getName

      public String getName()

    • setName

      public void setName(String name)

    • getDescription

      public String getDescription()

    • setDescription

      public void setDescription(String description)

    • getClassificationId

      public String getClassificationId(ScopCategory category)
      Return a portion of the classificationID corresponding to the specified category (class, fold, superfamily, family).

      Example: for SCOP family "b.5.1.1", getClassificationId(ScopCategory.Superfamily) => "b.5.1"

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object
      Returns:
      See Also:

    • equals

      public boolean equals(Object obj)
      Compares the fields sunID, category, classificationId, and name for equality
      Overrides:
      equals in class Object
      Parameters:
      obj -
      Returns:
      See Also:

    • clone

      protected Object clone() throws CloneNotSupportedException
      Overrides:
      clone in class Object
      Throws:
      CloneNotSupportedException