Class EntitySrcGen
java.lang.Object
org.biojava.nbio.structure.io.mmcif.model.EntitySrcGen
Data items in the ENTITY_SRC_GEN category record details of
the source from which the entity was obtained in cases
where the source was genetically manipulated. The
following are treated separately: items pertaining to the tissue
from which the gene was obtained, items pertaining to the host
organism for gene expression and items pertaining to the actual
producing organism (plasmid).
- Author:
- Andreas Prlic
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoidsetEntity_id(String entity_id) voidsetExpression_system_id(String expression_system_id) voidsetGene_src_common_name(String gene_src_common_name) voidsetGene_src_details(String gene_src_details) voidsetGene_src_dev_stage(String gene_src_dev_stage) voidsetGene_src_genus(String gene_src_genus) voidsetGene_src_species(String gene_src_species) voidsetGene_src_strain(String gene_src_strain) voidsetGene_src_tissue(String gene_src_tissue) voidsetGene_src_tissue_fraction(String gene_src_tissue_fraction) voidsetHost_org_common_name(String host_org_common_name) voidsetHost_org_details(String host_org_details) voidsetHost_org_genus(String host_org_genus) voidsetHost_org_species(String host_org_species) voidsetHost_org_strain(String host_org_strain) voidsetPdbx_alt_source_flag(String pdbx_alt_source_flag) voidsetPdbx_beg_seq_num(String pdbx_beg_seq_num) voidsetPdbx_description(String pdbx_description) voidsetPdbx_end_seq_num(String pdbx_end_seq_num) voidsetPdbx_gene_src_atcc(String pdbx_gene_src_atcc) voidsetPdbx_gene_src_cell(String pdbx_gene_src_cell) voidsetPdbx_gene_src_cell_line(String pdbx_gene_src_cell_line) voidsetPdbx_gene_src_cellular_location(String pdbx_gene_src_cellular_location) voidsetPdbx_gene_src_fragment(String pdbx_gene_src_fragment) voidsetPdbx_gene_src_gene(String pdbx_gene_src_gene) voidsetPdbx_gene_src_ncbi_taxonomy_id(String pdbx_gene_src_ncbi_taxonomy_id) voidsetPdbx_gene_src_organ(String pdbx_gene_src_organ) voidsetPdbx_gene_src_organelle(String pdbx_gene_src_organelle) voidsetPdbx_gene_src_plasmid(String pdbx_gene_src_plasmid) voidsetPdbx_gene_src_plasmid_name(String pdbx_gene_src_plasmid_name) voidsetPdbx_gene_src_scientific_name(String pdbx_gene_src_scientific_name) voidsetPdbx_gene_src_variant(String pdbx_gene_src_variant) voidsetPdbx_host_org_atcc(String pdbx_host_org_atcc) voidsetPdbx_host_org_cell(String pdbx_host_org_cell) voidsetPdbx_host_org_cell_line(String pdbx_host_org_cell_line) voidsetPdbx_host_org_cellular_location(String pdbx_host_org_cellular_location) voidsetPdbx_host_org_culture_collection(String pdbx_host_org_culture_collection) voidsetPdbx_host_org_gene(String pdbx_host_org_gene) voidsetPdbx_host_org_ncbi_taxonomy_id(String pdbx_host_org_ncbi_taxonomy_id) voidsetPdbx_host_org_organ(String pdbx_host_org_organ) voidsetPdbx_host_org_organelle(String pdbx_host_org_organelle) voidsetPdbx_host_org_scientific_name(String pdbx_host_org_scientific_name) voidsetPdbx_host_org_strain(String pdbx_host_org_strain) voidsetPdbx_host_org_tissue(String pdbx_host_org_tissue) voidsetPdbx_host_org_tissue_fraction(String pdbx_host_org_tissue_fraction) voidsetPdbx_host_org_variant(String pdbx_host_org_variant) voidsetPdbx_host_org_vector(String pdbx_host_org_vector) voidsetPdbx_host_org_vector_type(String pdbx_host_org_vector_type) voidsetPdbx_seq_type(String pdbx_seq_type) voidsetPdbx_src_id(String pdbx_src_id) voidsetPlasmid_details(String plasmid_details) voidsetPlasmid_name(String plasmid_name) voidsetStart_construct_id(String start_construct_id)
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Constructor Details
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EntitySrcGen
public EntitySrcGen()
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Method Details
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getEntity_id
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setEntity_id
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getExpression_system_id
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setExpression_system_id
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getGene_src_common_name
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setGene_src_common_name
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getGene_src_details
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setGene_src_details
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getGene_src_dev_stage
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setGene_src_dev_stage
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getGene_src_genus
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setGene_src_genus
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getGene_src_species
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setGene_src_species
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getGene_src_strain
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setGene_src_strain
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getGene_src_tissue
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setGene_src_tissue
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getGene_src_tissue_fraction
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setGene_src_tissue_fraction
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getHost_org_common_name
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setHost_org_common_name
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getHost_org_details
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setHost_org_details
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getHost_org_genus
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setHost_org_genus
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getHost_org_species
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setHost_org_species
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getHost_org_strain
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setHost_org_strain
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getPdbx_src_id
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setPdbx_src_id
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getPdbx_seq_type
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setPdbx_seq_type
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getPdbx_alt_source_flag
- Returns:
- the pdbx_alt_source_flag
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setPdbx_alt_source_flag
- Parameters:
pdbx_alt_source_flag- the pdbx_alt_source_flag to set
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getPdbx_beg_seq_num
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setPdbx_beg_seq_num
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getPdbx_end_seq_num
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setPdbx_end_seq_num
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getPdbx_description
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setPdbx_description
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getPdbx_gene_src_atcc
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setPdbx_gene_src_atcc
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getPdbx_gene_src_cell
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setPdbx_gene_src_cell
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getPdbx_gene_src_cell_line
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setPdbx_gene_src_cell_line
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getPdbx_gene_src_cellular_location
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setPdbx_gene_src_cellular_location
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getPdbx_gene_src_fragment
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setPdbx_gene_src_fragment
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getPdbx_gene_src_gene
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setPdbx_gene_src_gene
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getPdbx_gene_src_ncbi_taxonomy_id
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setPdbx_gene_src_ncbi_taxonomy_id
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getPdbx_gene_src_organ
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setPdbx_gene_src_organ
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getPdbx_gene_src_organelle
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setPdbx_gene_src_organelle
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getPdbx_gene_src_plasmid
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setPdbx_gene_src_plasmid
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getPdbx_gene_src_plasmid_name
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setPdbx_gene_src_plasmid_name
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getPdbx_gene_src_scientific_name
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setPdbx_gene_src_scientific_name
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getPdbx_gene_src_variant
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setPdbx_gene_src_variant
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getPdbx_host_org_atcc
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setPdbx_host_org_atcc
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getPdbx_host_org_cell
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setPdbx_host_org_cell
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getPdbx_host_org_cell_line
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setPdbx_host_org_cell_line
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getPdbx_host_org_cellular_location
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setPdbx_host_org_cellular_location
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getPdbx_host_org_culture_collection
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setPdbx_host_org_culture_collection
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getPdbx_host_org_gene
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setPdbx_host_org_gene
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getPdbx_host_org_ncbi_taxonomy_id
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setPdbx_host_org_ncbi_taxonomy_id
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getPdbx_host_org_organ
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setPdbx_host_org_organ
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getPdbx_host_org_organelle
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setPdbx_host_org_organelle
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getPdbx_host_org_scientific_name
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setPdbx_host_org_scientific_name
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getPdbx_host_org_strain
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setPdbx_host_org_strain
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getPdbx_host_org_tissue
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setPdbx_host_org_tissue
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getPdbx_host_org_tissue_fraction
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setPdbx_host_org_tissue_fraction
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getPdbx_host_org_variant
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setPdbx_host_org_variant
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getPdbx_host_org_vector
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setPdbx_host_org_vector
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getPdbx_host_org_vector_type
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setPdbx_host_org_vector_type
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getPlasmid_details
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setPlasmid_details
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getPlasmid_name
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setPlasmid_name
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getStart_construct_id
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setStart_construct_id
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