Package org.biojava.nbio.core.sequence

Class AccessionID

java.lang.Object
org.biojava.nbio.core.sequence.AccessionID
public class AccessionID extends Object
Used in Sequences as the unique indentifier. If possible, set the DataSource to know the source of the id. This allows a SequenceProxy to gather features or related sequences Protein->Gene as an example. When parsing a Blast file it is also possible to identify the type of ID
Author:
Scooter Willis, Jacek Grzebyta

  • Constructor Details

    • AccessionID

      public AccessionID()

    • AccessionID

      public AccessionID(String id)
      Parameters:
      id -

    • AccessionID

      public AccessionID(String id, DataSource source)
      Parameters:
      id -
      source -

    • AccessionID

      public AccessionID(String id, DataSource source, Integer version, String identifier)

  • Method Details

    • getID

      public String getID()
      Returns:
      the id

    • getDataSource

      public DataSource getDataSource()
      Returns:
      the source

    • equals

      public boolean equals(Object o)
      Overrides:
      equals in class Object

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object

    • getVersion

      public Integer getVersion()
      In case if the getID() is not unique keeps the id version.
      Returns:
      the version

    • setVersion

      public void setVersion(Integer version)

    • getIdentifier

      public String getIdentifier()
      In case if getID() in not unique keeps the alternative id, eg. NCBI GI number. This may null.
      Returns:

    • setIdentifier

      public void setIdentifier(String identifier)

    • toString

      public String toString()
      Overrides:
      toString in class Object