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opteryx","c":"Configuration","l":"getPathToLocalFastme()"},{"p":"org.forester.archaeopteryx.tools","c":"InferenceManager","l":"getPathToLocalFastme()"},{"p":"org.forester.archaeopteryx","c":"Configuration","l":"getPathToLocalMafft()"},{"p":"org.forester.archaeopteryx.tools","c":"InferenceManager","l":"getPathToLocalMafft()"},{"p":"org.forester.archaeopteryx","c":"Configuration","l":"getPathToLocalRaxml()"},{"p":"org.forester.archaeopteryx.tools","c":"InferenceManager","l":"getPathToLocalRaxml()"},{"p":"org.biojava.nbio.structure","c":"Element","l":"getPaulingElectronegativity()"},{"p":"org.biojava.nbio.structure.io.mmcif.model","c":"PdbxNonPolyScheme","l":"getPdb_ins_code()"},{"p":"org.biojava.nbio.structure.io.mmcif.model","c":"PdbxPolySeqScheme","l":"getPdb_ins_code()"},{"p":"org.biojava.nbio.structure.io.mmcif.model","c":"PdbxNonPolyScheme","l":"getPdb_mon_id()"},{"p":"org.biojava.nbio.structure.io.mmcif.model","c":"PdbxPolySeqScheme","l":"getPdb_mon_id()"},{"p":"org.biojava.nbio.structure.io.mmcif.model","c":"PdbxNonPolyScheme","l":"getPdb_seq_num()"},{"p":"org.biojava.nbio.structure.io.mmcif.model","c":"PdbxPolySeqScheme","l":"getPdb_seq_num()"},{"p":"org.biojava.nbio.structure.io.mmcif.model","c":"PdbxNonPolyScheme","l":"getPdb_strand_id()"},{"p":"org.biojava.nbio.structure.io.mmcif.model","c":"PdbxPolySeqScheme","l":"getPdb_strand_id()"},{"p":"org.biojava.nbio.structure.align.ce","c":"StartupParameters","l":"getPdb1()"},{"p":"org.biojava.nbio.structure.align.pairwise","c":"AlignmentResult","l":"getPdb1()"},{"p":"org.biojava.nbio.structure.align.ce","c":"StartupParameters","l":"getPdb2()"},{"p":"org.biojava.nbio.structure.align.pairwise","c":"AlignmentResult","l":"getPdb2()"},{"p":"org.biojava.nbio.structure.align.model","c":"AFPChain","l":"getPdbAln()"},{"p":"org.biojava.nbio.protmod","c":"ProteinModification","l":"getPdbccId()"},{"p":"org.biojava.nbio.protmod","c":"ProteinModificationImpl","l":"getPdbccId()"},{"p":"org.biojava.nbio.protmod","c":"Component","l":"getPdbccIds()"},{"p":"org.biojava.nbio.protmod","c":"ProteinModification","l":"getPdbccName()"},{"p":"org.biojava.nbio.protmod","c":"ProteinModificationImpl","l":"getPdbccName()"},{"p":"org.biojava.nbio.structure.symmetry.utils","c":"BlastClustReader","l":"getPdbChainIdClusters()"},{"p":"org.biojava.nbio.structure.symmetry.utils","c":"BlastClustReader","l":"getPdbChainIdClusters(String)","u":"getPdbChainIdClusters(java.lang.String)"},{"p":"org.biojava.nbio.core.sequence.io.util","c":"IOUtils","l":"getPDBCharacter(boolean, 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