headsq2dcm.py

 
 
"""
Usage:
 python headsq2dcm.py -D /path/to/VTKData
"""
 
import vtk
import vtkgdcm
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
 
reader = vtk.vtkVolume16Reader()
reader.SetDataDimensions(64, 64)
reader.SetDataByteOrderToLittleEndian()
reader.SetFilePrefix(VTK_DATA_ROOT + "/Data/headsq/quarter")
reader.SetImageRange(1, 93)
reader.SetDataSpacing(3.2, 3.2, 1.5)
 
cast = vtk.vtkImageCast()
cast.SetInput( reader.GetOutput() )
cast.SetOutputScalarTypeToUnsignedChar()
 
# By default this is creating a Multiframe Grayscale Word Secondary Capture Image Storage
writer = vtkgdcm.vtkGDCMImageWriter()
writer.SetFileName( "headsq.dcm" )
writer.SetInput( reader.GetOutput() )
# cast -> Multiframe Grayscale Byte Secondary Capture Image Storage
#writer.SetInput( cast.GetOutput() )
writer.SetFileDimensionality( 3 )
writer.Write()