FixOrientation.cxx

/*=========================================================================
 
  Program: GDCM (Grassroots DICOM). A DICOM library
 
  Copyright (c) 2006-2011 Mathieu Malaterre
  All rights reserved.
  See Copyright.txt or http://gdcm.sourceforge.net/Copyright.html for details.
 
     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.
 
=========================================================================*/
#include "gdcmReader.h"
#include "gdcmWriter.h"
#include "gdcmFile.h"
#include "gdcmOrientation.h"
#include "gdcmAttribute.h"
 
// Very simple orientation changer, fix invalid dataset
int main(int argc, char* argv[] )
{
  // assume AXIAL input for now
  if( argc < 3 )
    {
    std::cerr << argv[0] << " input.dcm output.dcm" << std::endl;
    return 1;
    }
  const char *filename = argv[1];
  const char *outfilename = argv[2];
 
  gdcm::Reader reader;
  reader.SetFileName( filename );
  if (! reader.Read() )
    {
    return 1;
    }
 
  const double axial[] = { 1,0,0, 0,1,0 };
  (void)axial;
  const double coronal[] = { 0,0,1, 1,0,0 };
  (void)coronal;
  const double sagittal[] = { 0,1,0, 0,0,1 };
  (void)sagittal;
  gdcm::Attribute<0x0020,0x0032> at1; // IPP
  (void)at1;
  gdcm::Attribute<0x0020,0x0037> at2; // IOP
  (void)at2;
 
  gdcm::File & f = reader.GetFile();
  gdcm::DataSet & ds = f.GetDataSet();
  at1.SetFromDataSet( ds );
#if 0
  at2.SetFromDataSet( ds );
  const double * iop = at2.GetValues();
  if( !std::equal(iop, iop + 6, axial ) )
  {
    gdcm::Orientation::OrientationType type = gdcm::Orientation::GetType ( iop );
    std::cerr << "Wrong orientation: " << gdcm::Orientation::GetLabel( type ) << std::endl;
    return 1;
  }
  at2.SetValues( sagittal );
  ds.Replace( at2.GetAsDataElement() );
#endif
 
  // for sagittal: swap element 0 & 2
  const double tmp0 = at1.GetValue(0);
  const double tmp2 = at1.GetValue(2);
  (void)tmp2;
  //at1.SetValue(tmp2, 0);
  //at1.SetValue(tmp0, 2);
  at1.SetValue( - tmp0 );
  ds.Replace( at1.GetAsDataElement() );
 
  gdcm::Writer writer;
  writer.SetFile( f );
  writer.SetFileName( outfilename );
  if ( !writer.Write() )
    {
    return 1;
    }
 
  return 0;
}