itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet > Class Template Reference

#include <itkStatisticalShapePointPenalty.h>

Detailed Description

template<class TFixedPointSet, class TMovingPointSet>
class itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >

Computes the Mahalanobis distance between the transformed shape and a mean shape. A model mean and covariance are required.

Author

F.F. Berendsen, Image Sciences Institute, UMC Utrecht, The Netherlands

Note

This work was funded by the projects Care4Me and Mediate.

If you use the StatisticalShapePenalty anywhere we would appreciate if you cite the following article:
F.F. Berendsen et al., Free-form image registration regularized by a statistical shape model: application to organ segmentation in cervical MR, Comput. Vis. Image Understand. (2013), http://dx.doi.org/10.1016/j.cviu.2012.12.006

Definition at line 56 of file itkStatisticalShapePointPenalty.h.

Inheritance diagram for itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >:

Public Types
using	ConstPointer = SmartPointer< const Self >
using	CoordRepType = typename OutputPointType::CoordRepType
using	DerivativeValueType = typename DerivativeType::ValueType
using	FixedPointSetConstPointer = typename FixedPointSetType::ConstPointer
using	FixedPointSetType = TFixedPointSet
using	InputPointType = typename TransformType::InputPointType
using	MovingPointSetConstPointer = typename MovingPointSetType::ConstPointer
using	MovingPointSetType = TMovingPointSet
using	NonZeroJacobianIndicesType = typename TransformType::NonZeroJacobianIndicesType
using	OutputPointType = typename TransformType::OutputPointType
using	PCACovarianceType = vnl_svd_economy< CoordRepType >
using	PointDataIterator = typename FixedPointSetType::PointDataContainer::ConstIterator
using	Pointer = SmartPointer< Self >
using	PointIterator = typename FixedPointSetType::PointsContainer::ConstIterator
using	ProposalDerivativeType = typename std::vector< VnlVectorType * >
using	Self = StatisticalShapePointPenalty
using	Superclass = SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
using	TransformJacobianType = typename TransformType::JacobianType
using	TransformParametersType = typename TransformType::ParametersType
using	TransformPointer = typename TransformType::Pointer
using	TransformType = AdvancedTransform< CoordinateRepresentationType, Self::FixedPointSetDimension, Self::MovingPointSetDimension >
using	VnlMatrixType = vnl_matrix< CoordRepType >
using	VnlVectorType = vnl_vector< CoordRepType >
Public Types inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
using	ConstPointer = SmartPointer< const Self >
using	CoordinateRepresentationType = Superclass::ParametersValueType
using	DerivativeValueType = typename DerivativeType::ValueType
using	FixedImageMaskConstPointer = typename FixedImageMaskType::ConstPointer
using	FixedImageMaskPointer = typename FixedImageMaskType::Pointer
using	FixedImageMaskType = ImageMaskSpatialObject< Self::FixedPointSetDimension >
using	FixedPointSetConstPointer = typename FixedPointSetType::ConstPointer
using	FixedPointSetPixelType = typename FixedPointSetType::PixelType
using	FixedPointSetType = TFixedPointSet
using	InputPointType = typename TransformType::InputPointType
using	MovingImageMaskConstPointer = typename MovingImageMaskType::ConstPointer
using	MovingImageMaskPointer = typename MovingImageMaskType::Pointer
using	MovingImageMaskType = ImageMaskSpatialObject< Self::MovingPointSetDimension >
using	MovingPointSetConstPointer = typename MovingPointSetType::ConstPointer
using	MovingPointSetPixelType = typename MovingPointSetType::PixelType
using	MovingPointSetType = TMovingPointSet
using	NonZeroJacobianIndicesType = typename TransformType::NonZeroJacobianIndicesType
using	OutputPointType = typename TransformType::OutputPointType
using	PointDataIterator = typename FixedPointSetType::PointDataContainer::ConstIterator
using	Pointer = SmartPointer< Self >
using	PointIterator = typename FixedPointSetType::PointsContainer::ConstIterator
using	Self = SingleValuedPointSetToPointSetMetric
using	Superclass = SingleValuedCostFunction
using	TransformJacobianType = typename TransformType::JacobianType
using	TransformParametersType = typename TransformType::ParametersType
using	TransformPointer = typename TransformType::Pointer
using	TransformType = AdvancedTransform< CoordinateRepresentationType, Self::FixedPointSetDimension, Self::MovingPointSetDimension >

Public Member Functions
virtual void	BaseVarianceNeedsUpdateOff ()
virtual void	BaseVarianceNeedsUpdateOn ()
virtual MeasureType	GetBaseVariance () const
virtual MeasureType	GetCentroidXVariance () const
virtual MeasureType	GetCentroidYVariance () const
virtual MeasureType	GetCentroidZVariance () const
virtual const char *	GetClassName () const
virtual MeasureType	GetCutOffSharpness () const
virtual MeasureType	GetCutOffValue () const
void	GetDerivative (const TransformParametersType &parameters, DerivativeType &Derivative) const override
virtual const bool &	GetNormalizedShapeModel ()
virtual const int &	GetShapeModelCalculation ()
virtual MeasureType	GetShrinkageIntensity () const
virtual MeasureType	GetSizeVariance () const
MeasureType	GetValue (const TransformParametersType &parameters) const override
void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override
void	Initialize () override
	ITK_DISALLOW_COPY_AND_MOVE (StatisticalShapePointPenalty)
virtual void	NormalizedShapeModelOff ()
virtual void	NormalizedShapeModelOn ()
virtual void	SetBaseVariance (MeasureType _arg)
virtual void	SetBaseVarianceNeedsUpdate (bool _arg)
virtual void	SetCentroidXVariance (MeasureType _arg)
virtual void	SetCentroidYVariance (MeasureType _arg)
virtual void	SetCentroidZVariance (MeasureType _arg)
virtual void	SetCovarianceMatrix (const vnl_matrix< double > *_arg)
virtual void	SetCutOffSharpness (MeasureType _arg)
virtual void	SetCutOffValue (MeasureType _arg)
virtual void	SetEigenValues (const vnl_vector< double > *_arg)
virtual void	SetEigenVectors (const vnl_matrix< double > *_arg)
virtual void	SetMeanVector (const vnl_vector< double > *_arg)
virtual void	SetNormalizedShapeModel (bool _arg)
virtual void	SetShapeModelCalculation (int _arg)
virtual void	SetShrinkageIntensity (MeasureType _arg)
virtual void	SetShrinkageIntensityNeedsUpdate (bool _arg)
virtual void	SetSizeVariance (MeasureType _arg)
virtual void	SetVariancesNeedsUpdate (bool _arg)
virtual void	ShrinkageIntensityNeedsUpdateOff ()
virtual void	ShrinkageIntensityNeedsUpdateOn ()
virtual void	VariancesNeedsUpdateOff ()
virtual void	VariancesNeedsUpdateOn ()
Public Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
virtual const FixedImageMaskType *	GetFixedImageMask ()
virtual const FixedPointSetType *	GetFixedPointSet ()
virtual const MovingImageMaskType *	GetMovingImageMask ()
virtual const MovingPointSetType *	GetMovingPointSet ()
unsigned int	GetNumberOfParameters () const override
virtual const TransformType *	GetTransform ()
virtual const bool &	GetUseMetricSingleThreaded ()
	ITK_DISALLOW_COPY_AND_MOVE (SingleValuedPointSetToPointSetMetric)
	itkStaticConstMacro (FixedPointSetDimension, unsigned int, TFixedPointSet::PointDimension)
	itkStaticConstMacro (MovingPointSetDimension, unsigned int, TMovingPointSet::PointDimension)
virtual void	SetFixedImageMask (const FixedImageMaskType *_arg)
virtual void	SetFixedPointSet (const FixedPointSetType *_arg)
virtual void	SetMovingImageMask (const MovingImageMaskType *_arg)
virtual void	SetMovingPointSet (const MovingPointSetType *_arg)
virtual void	SetTransform (TransformType *_arg)
void	SetTransformParameters (const ParametersType &parameters) const
virtual void	SetUseMetricSingleThreaded (bool _arg)
virtual void	UseMetricSingleThreadedOff ()
virtual void	UseMetricSingleThreadedOn ()

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
void	PrintSelf (std::ostream &os, Indent indent) const override
	StatisticalShapePointPenalty ()
	~StatisticalShapePointPenalty () override
Protected Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
void	PrintSelf (std::ostream &os, Indent indent) const override
	SingleValuedPointSetToPointSetMetric ()=default
	~SingleValuedPointSetToPointSetMetric () override=default

Private Member Functions
void	CalculateCutOffDerivative (typename DerivativeType::element_type &derivativeElement, const MeasureType &value) const
void	CalculateCutOffValue (MeasureType &value) const
void	CalculateDerivative (DerivativeType &derivative, const MeasureType &value, const VnlVectorType &differenceVector, const VnlVectorType &eigrot, const unsigned int shapeLength) const
void	CalculateValue (MeasureType &value, VnlVectorType &differenceVector, VnlVectorType &centerrotated, VnlVectorType &eigrot) const
void	FillProposalDerivative (const OutputPointType &fixedPoint, const unsigned int vertexindex) const
void	FillProposalVector (const OutputPointType &fixedPoint, const unsigned int vertexindex) const
void	NormalizeProposalVector (const unsigned int shapeLength) const
void	UpdateCentroidAndAlignProposalDerivative (const unsigned int shapeLength) const
void	UpdateCentroidAndAlignProposalVector (const unsigned int shapeLength) const
void	UpdateL2 (const unsigned int shapeLength) const
void	UpdateL2AndNormalizeProposalDerivative (const unsigned int shapeLength) const

Private Attributes
double	m_BaseStd {}
double	m_BaseVariance {}
bool	m_BaseVarianceNeedsUpdate {}
double	m_CentroidXStd {}
double	m_CentroidXVariance {}
double	m_CentroidYStd {}
double	m_CentroidYVariance {}
double	m_CentroidZStd {}
double	m_CentroidZVariance {}
const VnlMatrixType *	m_CovarianceMatrix {}
double	m_CutOffSharpness {}
double	m_CutOffValue {}
const VnlVectorType *	m_EigenValues {}
VnlVectorType *	m_EigenValuesRegularized {}
const VnlMatrixType *	m_EigenVectors {}
VnlMatrixType *	m_InverseCovarianceMatrix {}
VnlVectorType	m_MeanValues {}
const VnlVectorType *	m_MeanVector {}
bool	m_NormalizedShapeModel {}
ProposalDerivativeType *	m_ProposalDerivative {}
unsigned int	m_ProposalLength {}
VnlVectorType	m_ProposalVector {}
int	m_ShapeModelCalculation {}
double	m_ShrinkageIntensity {}
bool	m_ShrinkageIntensityNeedsUpdate {}
double	m_SizeStd {}
double	m_SizeVariance {}
bool	m_VariancesNeedsUpdate {}

Additional Inherited Members
Protected Attributes inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
FixedImageMaskConstPointer	m_FixedImageMask { nullptr }
FixedPointSetConstPointer	m_FixedPointSet { nullptr }
MovingImageMaskConstPointer	m_MovingImageMask { nullptr }
MovingPointSetConstPointer	m_MovingPointSet { nullptr }
unsigned int	m_NumberOfPointsCounted { 0 }
TransformPointer	m_Transform { nullptr }
bool	m_UseMetricSingleThreaded { true }

Member Typedef Documentation

ConstPointer

template<class TFixedPointSet , class TMovingPointSet >

using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ConstPointer = SmartPointer<const Self>

Definition at line 66 of file itkStatisticalShapePointPenalty.h.

CoordRepType

template<class TFixedPointSet , class TMovingPointSet >

using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CoordRepType = typename OutputPointType::CoordRepType

Definition at line 95 of file itkStatisticalShapePointPenalty.h.

DerivativeValueType

template<class TFixedPointSet , class TMovingPointSet >

using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::DerivativeValueType = typename DerivativeType::ValueType

Definition at line 111 of file itkSingleValuedPointSetToPointSetMetric.h.

FixedPointSetConstPointer

template<class TFixedPointSet , class TMovingPointSet >

using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::FixedPointSetConstPointer = typename FixedPointSetType::ConstPointer

Definition at line 81 of file itkSingleValuedPointSetToPointSetMetric.h.

FixedPointSetType

template<class TFixedPointSet , class TMovingPointSet >

using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::FixedPointSetType = TFixedPointSet

Typedefs.

Definition at line 79 of file itkSingleValuedPointSetToPointSetMetric.h.

InputPointType

template<class TFixedPointSet , class TMovingPointSet >

using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::InputPointType = typename TransformType::InputPointType

Definition at line 96 of file itkSingleValuedPointSetToPointSetMetric.h.

MovingPointSetConstPointer

template<class TFixedPointSet , class TMovingPointSet >

using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::MovingPointSetConstPointer = typename MovingPointSetType::ConstPointer

Definition at line 84 of file itkSingleValuedPointSetToPointSetMetric.h.

MovingPointSetType

template<class TFixedPointSet , class TMovingPointSet >

using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::MovingPointSetType = TMovingPointSet

Definition at line 82 of file itkSingleValuedPointSetToPointSetMetric.h.

NonZeroJacobianIndicesType

template<class TFixedPointSet , class TMovingPointSet >

using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::NonZeroJacobianIndicesType = typename TransformType::NonZeroJacobianIndicesType

Typedefs for support of sparse Jacobians and compact support of transformations.

Definition at line 115 of file itkSingleValuedPointSetToPointSetMetric.h.

OutputPointType

template<class TFixedPointSet , class TMovingPointSet >

using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::OutputPointType = typename TransformType::OutputPointType

Definition at line 97 of file itkSingleValuedPointSetToPointSetMetric.h.

PCACovarianceType

template<class TFixedPointSet , class TMovingPointSet >

using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::PCACovarianceType = vnl_svd_economy<CoordRepType>

Definition at line 101 of file itkStatisticalShapePointPenalty.h.

PointDataIterator

template<class TFixedPointSet , class TMovingPointSet >

using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::PointDataIterator = typename FixedPointSetType::PointDataContainer::ConstIterator

Definition at line 86 of file itkSingleValuedPointSetToPointSetMetric.h.

Pointer

template<class TFixedPointSet , class TMovingPointSet >

using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::Pointer = SmartPointer<Self>

Definition at line 65 of file itkStatisticalShapePointPenalty.h.

PointIterator

template<class TFixedPointSet , class TMovingPointSet >

using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::PointIterator = typename FixedPointSetType::PointsContainer::ConstIterator

Definition at line 85 of file itkSingleValuedPointSetToPointSetMetric.h.

ProposalDerivativeType

template<class TFixedPointSet , class TMovingPointSet >

using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ProposalDerivativeType = typename std::vector<VnlVectorType *>

Definition at line 99 of file itkStatisticalShapePointPenalty.h.

Self

template<class TFixedPointSet , class TMovingPointSet >

using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::Self = StatisticalShapePointPenalty

Standard class typedefs.

Definition at line 63 of file itkStatisticalShapePointPenalty.h.

Superclass

template<class TFixedPointSet , class TMovingPointSet >

using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::Superclass = SingleValuedPointSetToPointSetMetric<TFixedPointSet, TMovingPointSet>

Definition at line 64 of file itkStatisticalShapePointPenalty.h.

TransformJacobianType

template<class TFixedPointSet , class TMovingPointSet >

using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::TransformJacobianType = typename TransformType::JacobianType

Definition at line 99 of file itkSingleValuedPointSetToPointSetMetric.h.

TransformParametersType

template<class TFixedPointSet , class TMovingPointSet >

using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::TransformParametersType = typename TransformType::ParametersType

Definition at line 98 of file itkSingleValuedPointSetToPointSetMetric.h.

TransformPointer

template<class TFixedPointSet , class TMovingPointSet >

using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::TransformPointer = typename TransformType::Pointer

Definition at line 95 of file itkSingleValuedPointSetToPointSetMetric.h.

TransformType

template<class TFixedPointSet , class TMovingPointSet >

using itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >::TransformType = AdvancedTransform<CoordinateRepresentationType, Self::FixedPointSetDimension, Self::MovingPointSetDimension>

More typedefs.

Definition at line 93 of file itkSingleValuedPointSetToPointSetMetric.h.

VnlMatrixType

template<class TFixedPointSet , class TMovingPointSet >

using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::VnlMatrixType = vnl_matrix<CoordRepType>

Definition at line 97 of file itkStatisticalShapePointPenalty.h.

VnlVectorType

template<class TFixedPointSet , class TMovingPointSet >

using itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::VnlVectorType = vnl_vector<CoordRepType>

Definition at line 96 of file itkStatisticalShapePointPenalty.h.

Constructor & Destructor Documentation

StatisticalShapePointPenalty()

template<class TFixedPointSet , class TMovingPointSet >

itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::StatisticalShapePointPenalty ( )

protected

~StatisticalShapePointPenalty()

template<class TFixedPointSet , class TMovingPointSet >

itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::~StatisticalShapePointPenalty ( )

overrideprotected

Member Function Documentation

BaseVarianceNeedsUpdateOff()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::BaseVarianceNeedsUpdateOff ( )

virtual

BaseVarianceNeedsUpdateOn()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::BaseVarianceNeedsUpdateOn ( )

virtual

CalculateCutOffDerivative()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CalculateCutOffDerivative ( typename DerivativeType::element_type &  derivativeElement, const MeasureType &  value  ) const

private

CalculateCutOffValue()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CalculateCutOffValue ( MeasureType &  value ) const

private

CalculateDerivative()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CalculateDerivative ( DerivativeType &  derivative, const MeasureType &  value, const VnlVectorType &  differenceVector, const VnlVectorType &  eigrot, const unsigned int  shapeLength  ) const

private

CalculateValue()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CalculateValue ( MeasureType &  value, VnlVectorType &  differenceVector, VnlVectorType &  centerrotated, VnlVectorType &  eigrot  ) const

private

FillProposalDerivative()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::FillProposalDerivative ( const OutputPointType &  fixedPoint, const unsigned int  vertexindex  ) const

private

FillProposalVector()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::FillProposalVector ( const OutputPointType &  fixedPoint, const unsigned int  vertexindex  ) const

private

GetBaseVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetBaseVariance ( ) const

virtual

GetCentroidXVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCentroidXVariance ( ) const

virtual

GetCentroidYVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCentroidYVariance ( ) const

virtual

GetCentroidZVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCentroidZVariance ( ) const

virtual

GetClassName()

template<class TFixedPointSet , class TMovingPointSet >

virtual const char * itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >.

Reimplemented in elastix::StatisticalShapePenalty< TElastix >.

GetCutOffSharpness()

template<class TFixedPointSet , class TMovingPointSet >

virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCutOffSharpness ( ) const

virtual

GetCutOffValue()

template<class TFixedPointSet , class TMovingPointSet >

virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCutOffValue ( ) const

virtual

GetDerivative()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetDerivative ( const TransformParametersType &  parameters, DerivativeType &  Derivative  ) const

override

Get the derivatives of the match measure.

GetNormalizedShapeModel()

template<class TFixedPointSet , class TMovingPointSet >

virtual const bool & itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetNormalizedShapeModel ( )

virtual

GetShapeModelCalculation()

template<class TFixedPointSet , class TMovingPointSet >

virtual const int & itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetShapeModelCalculation ( )

virtual

GetShrinkageIntensity()

template<class TFixedPointSet , class TMovingPointSet >

virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetShrinkageIntensity ( ) const

virtual

GetSizeVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetSizeVariance ( ) const

virtual

GetValue()

template<class TFixedPointSet , class TMovingPointSet >

MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetValue ( const TransformParametersType &  parameters ) const

override

Get the value for single valued optimizers.

GetValueAndDerivative()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetValueAndDerivative ( const TransformParametersType &  parameters, MeasureType &  Value, DerivativeType &  Derivative  ) const

override

Get value and derivatives for multiple valued optimizers.

Initialize()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::Initialize ( )

overridevirtual

Initialization.

Reimplemented from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >.

ITK_DISALLOW_COPY_AND_MOVE()

template<class TFixedPointSet , class TMovingPointSet >

itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ITK_DISALLOW_COPY_AND_MOVE

(

StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >

)

New()

template<class TFixedPointSet , class TMovingPointSet >

static Pointer itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::New ( )

static

Method for creation through the object factory.

NormalizedShapeModelOff()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::NormalizedShapeModelOff ( )

virtual

NormalizedShapeModelOn()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::NormalizedShapeModelOn ( )

virtual

NormalizeProposalVector()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::NormalizeProposalVector ( const unsigned int  shapeLength ) const

private

PrintSelf()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotected

PrintSelf.

SetBaseVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetBaseVariance ( MeasureType  _arg )

virtual

Set/Get the BaseVariance parameter.

SetBaseVarianceNeedsUpdate()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetBaseVarianceNeedsUpdate ( bool  _arg )

virtual

SetCentroidXVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCentroidXVariance ( MeasureType  _arg )

virtual

SetCentroidYVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCentroidYVariance ( MeasureType  _arg )

virtual

SetCentroidZVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCentroidZVariance ( MeasureType  _arg )

virtual

SetCovarianceMatrix()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCovarianceMatrix ( const vnl_matrix< double > *  _arg )

virtual

SetCutOffSharpness()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCutOffSharpness ( MeasureType  _arg )

virtual

SetCutOffValue()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCutOffValue ( MeasureType  _arg )

virtual

SetEigenValues()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetEigenValues ( const vnl_vector< double > *  _arg )

virtual

SetEigenVectors()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetEigenVectors ( const vnl_matrix< double > *  _arg )

virtual

SetMeanVector()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetMeanVector ( const vnl_vector< double > *  _arg )

virtual

SetNormalizedShapeModel()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetNormalizedShapeModel ( bool  _arg )

virtual

SetShapeModelCalculation()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetShapeModelCalculation ( int  _arg )

virtual

SetShrinkageIntensity()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetShrinkageIntensity ( MeasureType  _arg )

virtual

Set/Get the shrinkageIntensity parameter.

SetShrinkageIntensityNeedsUpdate()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetShrinkageIntensityNeedsUpdate ( bool  _arg )

virtual

SetSizeVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetSizeVariance ( MeasureType  _arg )

virtual

SetVariancesNeedsUpdate()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetVariancesNeedsUpdate ( bool  _arg )

virtual

ShrinkageIntensityNeedsUpdateOff()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ShrinkageIntensityNeedsUpdateOff ( )

virtual

ShrinkageIntensityNeedsUpdateOn()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ShrinkageIntensityNeedsUpdateOn ( )

virtual

UpdateCentroidAndAlignProposalDerivative()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::UpdateCentroidAndAlignProposalDerivative ( const unsigned int  shapeLength ) const

private

UpdateCentroidAndAlignProposalVector()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::UpdateCentroidAndAlignProposalVector ( const unsigned int  shapeLength ) const

private

UpdateL2()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::UpdateL2 ( const unsigned int  shapeLength ) const

private

UpdateL2AndNormalizeProposalDerivative()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::UpdateL2AndNormalizeProposalDerivative ( const unsigned int  shapeLength ) const

private

VariancesNeedsUpdateOff()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::VariancesNeedsUpdateOff ( )

virtual

VariancesNeedsUpdateOn()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::VariancesNeedsUpdateOn ( )

virtual

Field Documentation

m_BaseStd

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_BaseStd {}

private

Definition at line 249 of file itkStatisticalShapePointPenalty.h.

m_BaseVariance

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_BaseVariance {}

private

Definition at line 248 of file itkStatisticalShapePointPenalty.h.

m_BaseVarianceNeedsUpdate

template<class TFixedPointSet , class TMovingPointSet >

bool itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_BaseVarianceNeedsUpdate {}

private

Definition at line 238 of file itkStatisticalShapePointPenalty.h.

m_CentroidXStd

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidXStd {}

private

Definition at line 229 of file itkStatisticalShapePointPenalty.h.

m_CentroidXVariance

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidXVariance {}

private

Definition at line 228 of file itkStatisticalShapePointPenalty.h.

m_CentroidYStd

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidYStd {}

private

Definition at line 231 of file itkStatisticalShapePointPenalty.h.

m_CentroidYVariance

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidYVariance {}

private

Definition at line 230 of file itkStatisticalShapePointPenalty.h.

m_CentroidZStd

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidZStd {}

private

Definition at line 233 of file itkStatisticalShapePointPenalty.h.

m_CentroidZVariance

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidZVariance {}

private

Definition at line 232 of file itkStatisticalShapePointPenalty.h.

m_CovarianceMatrix

template<class TFixedPointSet , class TMovingPointSet >

const VnlMatrixType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CovarianceMatrix {}

private

Definition at line 222 of file itkStatisticalShapePointPenalty.h.

m_CutOffSharpness

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CutOffSharpness {}

private

Definition at line 254 of file itkStatisticalShapePointPenalty.h.

m_CutOffValue

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CutOffValue {}

private

Definition at line 253 of file itkStatisticalShapePointPenalty.h.

m_EigenValues

template<class TFixedPointSet , class TMovingPointSet >

const VnlVectorType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_EigenValues {}

private

Definition at line 224 of file itkStatisticalShapePointPenalty.h.

m_EigenValuesRegularized

template<class TFixedPointSet , class TMovingPointSet >

VnlVectorType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_EigenValuesRegularized {}

private

Definition at line 241 of file itkStatisticalShapePointPenalty.h.

m_EigenVectors

template<class TFixedPointSet , class TMovingPointSet >

const VnlMatrixType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_EigenVectors {}

private

Definition at line 223 of file itkStatisticalShapePointPenalty.h.

m_InverseCovarianceMatrix

template<class TFixedPointSet , class TMovingPointSet >

VnlMatrixType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_InverseCovarianceMatrix {}

private

Definition at line 226 of file itkStatisticalShapePointPenalty.h.

m_MeanValues

template<class TFixedPointSet , class TMovingPointSet >

VnlVectorType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_MeanValues {}

mutableprivate

Definition at line 251 of file itkStatisticalShapePointPenalty.h.

m_MeanVector

template<class TFixedPointSet , class TMovingPointSet >

const VnlVectorType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_MeanVector {}

private

Definition at line 221 of file itkStatisticalShapePointPenalty.h.

m_NormalizedShapeModel

template<class TFixedPointSet , class TMovingPointSet >

bool itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_NormalizedShapeModel {}

private

Definition at line 245 of file itkStatisticalShapePointPenalty.h.

m_ProposalDerivative

template<class TFixedPointSet , class TMovingPointSet >

ProposalDerivativeType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ProposalDerivative {}

mutableprivate

Definition at line 243 of file itkStatisticalShapePointPenalty.h.

m_ProposalLength

template<class TFixedPointSet , class TMovingPointSet >

unsigned int itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ProposalLength {}

private

Definition at line 244 of file itkStatisticalShapePointPenalty.h.

m_ProposalVector

template<class TFixedPointSet , class TMovingPointSet >

VnlVectorType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ProposalVector {}

mutableprivate

Definition at line 250 of file itkStatisticalShapePointPenalty.h.

m_ShapeModelCalculation

template<class TFixedPointSet , class TMovingPointSet >

int itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ShapeModelCalculation {}

private

Definition at line 246 of file itkStatisticalShapePointPenalty.h.

m_ShrinkageIntensity

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ShrinkageIntensity {}

private

Definition at line 247 of file itkStatisticalShapePointPenalty.h.

m_ShrinkageIntensityNeedsUpdate

template<class TFixedPointSet , class TMovingPointSet >

bool itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ShrinkageIntensityNeedsUpdate {}

private

Definition at line 237 of file itkStatisticalShapePointPenalty.h.

m_SizeStd

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_SizeStd {}

private

Definition at line 235 of file itkStatisticalShapePointPenalty.h.

m_SizeVariance

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_SizeVariance {}

private

Definition at line 234 of file itkStatisticalShapePointPenalty.h.

m_VariancesNeedsUpdate

template<class TFixedPointSet , class TMovingPointSet >

bool itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_VariancesNeedsUpdate {}

private

Definition at line 239 of file itkStatisticalShapePointPenalty.h.