itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage > Class Template Reference

#include <itkKNNGraphAlphaMutualInformationImageToImageMetric.h>

Detailed Description

template<class TFixedImage, class TMovingImage>
class itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >

Computes similarity between two images to be registered.

This metric computes the alpha-Mutual Information (aMI) between two multi-channeled data sets. Said otherwise, given two sets of features, the aMI between them is calculated. Since for higher dimensional aMI it is infeasible to compute high dimensional joint histograms, here we adopt a framework based on the length of certain graphs, see Neemuchwala. Specifically, we use the k-Nearest Neighbour (kNN) graph, using an implementation provided by the Approximate Nearest Neighbour (ANN) software package.

Note that the feature image are given beforehand, and that values are calculated by interpolation on the transformed point. For some features, it would be better (but slower) to first apply the transform on the image and then recalculate the feature.

All the technical details can be found in:
M. Staring, U.A. van der Heide, S. Klein, M.A. Viergever and J.P.W. Pluim, "Registration of Cervical MRI Using Multifeature Mutual Information," IEEE Transactions on Medical Imaging, vol. 28, no. 9, pp. 1412 - 1421, September 2009.

Definition at line 74 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

Inheritance diagram for itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >:

Public Types
typedef ANNbdTree< ListSampleType >	ANNbdTreeType
typedef ANNBruteForceTree< ListSampleType >	ANNBruteForceTreeType
typedef ANNFixedRadiusTreeSearch< ListSampleType >	ANNFixedRadiusTreeSearchType
typedef ANNkDTree< ListSampleType >	ANNkDTreeType
typedef ANNPriorityTreeSearch< ListSampleType >	ANNPriorityTreeSearchType
typedef ANNStandardTreeSearch< ListSampleType >	ANNStandardTreeSearchType
typedef BinaryKNNTreeType::Pointer	BinaryKNNTreePointer
typedef BinaryKNNTreeSearchType::Pointer	BinaryKNNTreeSearchPointer
typedef BinaryTreeSearchBase< ListSampleType >	BinaryKNNTreeSearchType
typedef BinaryTreeBase< ListSampleType >	BinaryKNNTreeType
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef DerivativeType::ValueType	DerivativeValueType
typedef BinaryKNNTreeSearchType::DistanceArrayType	DistanceArrayType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef Superclass::FixedImageInterpolatorVectorType	FixedImageInterpolatorVectorType
typedef Superclass::FixedImageLimiterOutputType	FixedImageLimiterOutputType
typedef Superclass::FixedImageLimiterType	FixedImageLimiterType
typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer
typedef Superclass::FixedImageMaskType	FixedImageMaskType
typedef Superclass::FixedImageMaskVectorType	FixedImageMaskVectorType
typedef Superclass::FixedImagePixelType	FixedImagePixelType
typedef Superclass::FixedImageRegionType	FixedImageRegionType
typedef Superclass::FixedImageRegionVectorType	FixedImageRegionVectorType
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::FixedImageVectorType	FixedImageVectorType
typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer
typedef Superclass::GradientImageFilterType	GradientImageFilterType
typedef Superclass::GradientImagePointer	GradientImagePointer
typedef Superclass::GradientImageType	GradientImageType
typedef Superclass::GradientPixelType	GradientPixelType
typedef Superclass::ImageSampleContainerPointer	ImageSampleContainerPointer
typedef Superclass::ImageSampleContainerType	ImageSampleContainerType
typedef Superclass::ImageSamplerPointer	ImageSamplerPointer
typedef Superclass::ImageSamplerType	ImageSamplerType
typedef BinaryKNNTreeSearchType::IndexArrayType	IndexArrayType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InterpolatorPointer	InterpolatorPointer
typedef Superclass::InterpolatorType	InterpolatorType
typedef Superclass::InterpolatorVectorType	InterpolatorVectorType
typedef ListSampleType::Pointer	ListSamplePointer
typedef Statistics::ListSampleCArray< MeasurementVectorType, double >	ListSampleType
typedef Array< double >	MeasurementVectorType
typedef MeasurementVectorType::ValueType	MeasurementVectorValueType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef Superclass::MovingImageLimiterOutputType	MovingImageLimiterOutputType
typedef Superclass::MovingImageLimiterType	MovingImageLimiterType
typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer
typedef Superclass::MovingImageMaskType	MovingImageMaskType
typedef Superclass::MovingImageMaskVectorType	MovingImageMaskVectorType
typedef Superclass::MovingImagePixelType	MovingImagePixelType
typedef Superclass::MovingImageRegionType	MovingImageRegionType
typedef Superclass::MovingImageType	MovingImageType
typedef Superclass::MovingImageVectorType	MovingImageVectorType
typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RealType	RealType
typedef KNNGraphAlphaMutualInformationImageToImageMetric	Self
typedef MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >	Superclass
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef TransformJacobianType::ValueType	TransformJacobianValueType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
Public Types inherited from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef FixedImageInterpolatorType::Pointer	FixedImageInterpolatorPointer
typedef InterpolateImageFunction< FixedImageType, CoordinateRepresentationType >	FixedImageInterpolatorType
typedef std::vector< FixedImageInterpolatorPointer >	FixedImageInterpolatorVectorType
typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer
typedef Superclass::FixedImageMaskType	FixedImageMaskType
typedef std::vector< FixedImageMaskPointer >	FixedImageMaskVectorType
typedef Superclass::FixedImagePointer	FixedImagePointer
typedef Superclass::FixedImageRegionType	FixedImageRegionType
typedef std::vector< FixedImageRegionType >	FixedImageRegionVectorType
typedef Superclass::FixedImageType	FixedImageType
typedef std::vector< FixedImageConstPointer >	FixedImageVectorType
typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer
typedef Superclass::GradientImageFilterType	GradientImageFilterType
typedef Superclass::GradientImagePointer	GradientImagePointer
typedef Superclass::GradientImageType	GradientImageType
typedef Superclass::GradientPixelType	GradientPixelType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InterpolatorPointer	InterpolatorPointer
typedef Superclass::InterpolatorType	InterpolatorType
typedef std::vector< InterpolatorPointer >	InterpolatorVectorType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer
typedef Superclass::MovingImageMaskType	MovingImageMaskType
typedef std::vector< MovingImageMaskPointer >	MovingImageMaskVectorType
typedef Superclass::MovingImagePixelType	MovingImagePixelType
typedef Superclass::MovingImagePointer	MovingImagePointer
typedef Superclass::MovingImageType	MovingImageType
typedef std::vector< MovingImageConstPointer >	MovingImageVectorType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RealType	RealType
typedef MultiInputImageToImageMetricBase	Self
typedef AdvancedImageToImageMetric< TFixedImage, TMovingImage >	Superclass
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
typedef AdvancedTransform< ScalarType, FixedImageDimension, MovingImageDimension >	AdvancedTransformType
typedef BSplineOrder1TransformType::Pointer	BSplineOrder1TransformPointer
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 1 >	BSplineOrder1TransformType
typedef BSplineOrder2TransformType::Pointer	BSplineOrder2TransformPointer
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 2 >	BSplineOrder2TransformType
typedef BSplineOrder3TransformType::Pointer	BSplineOrder3TransformPointer
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 3 >	BSplineOrder3TransformType
typedef AdvancedCombinationTransform< ScalarType, FixedImageDimension >	CombinationTransformType
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef DerivativeType::ValueType	DerivativeValueType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef FixedImageLimiterType::OutputType	FixedImageLimiterOutputType
typedef FixedImageLimiterType::Pointer	FixedImageLimiterPointer
typedef LimiterFunctionBase< RealType, FixedImageDimension >	FixedImageLimiterType
typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer
typedef ImageMaskSpatialObject< itkGetStaticConstMacro(FixedImageDimension) >	FixedImageMaskSpatialObject2Type
typedef Superclass::FixedImageMaskType	FixedImageMaskType
typedef FixedImageType::PixelType	FixedImagePixelType
typedef FixedImageType::Pointer	FixedImagePointer
typedef Superclass::FixedImageRegionType	FixedImageRegionType
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer
typedef Superclass::GradientImageFilterType	GradientImageFilterType
typedef Superclass::GradientImagePointer	GradientImagePointer
typedef Superclass::GradientImageType	GradientImageType
typedef Superclass::GradientPixelType	GradientPixelType
typedef vnl_sparse_matrix< HessianValueType >	HessianType
typedef DerivativeType::ValueType	HessianValueType
typedef ImageSamplerType::OutputVectorContainerPointer	ImageSampleContainerPointer
typedef ImageSamplerType::OutputVectorContainerType	ImageSampleContainerType
typedef ImageSamplerType::Pointer	ImageSamplerPointer
typedef ImageSamplerBase< FixedImageType >	ImageSamplerType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InterpolatorPointer	InterpolatorPointer
typedef Superclass::InterpolatorType	InterpolatorType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef FixedArray< double, Self::MovingImageDimension >	MovingImageDerivativeScalesType
typedef MovingImageLimiterType::OutputType	MovingImageLimiterOutputType
typedef MovingImageLimiterType::Pointer	MovingImageLimiterPointer
typedef LimiterFunctionBase< RealType, MovingImageDimension >	MovingImageLimiterType
typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer
typedef ImageMaskSpatialObject< itkGetStaticConstMacro(MovingImageDimension) >	MovingImageMaskSpatialObject2Type
typedef Superclass::MovingImageMaskType	MovingImageMaskType
typedef Superclass::MovingImagePixelType	MovingImagePixelType
typedef MovingImageType::Pointer	MovingImagePointer
typedef MovingImageType::RegionType	MovingImageRegionType
typedef Superclass::MovingImageType	MovingImageType
typedef AdvancedTransformType::NumberOfParametersType	NumberOfParametersType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RealType	RealType
typedef TransformType::ScalarType	ScalarType
typedef AdvancedImageToImageMetric	Self
typedef ImageToImageMetric< TFixedImage, TMovingImage >	Superclass
typedef itk::PlatformMultiThreader	ThreaderType
typedef ThreaderType::WorkUnitInfo	ThreadInfoType
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType

Public Member Functions
virtual const double &	GetAlpha ()
virtual const double &	GetAvoidDivisionBy ()
virtual const char *	GetClassName () const
void	GetDerivative (const TransformParametersType &parameters, DerivativeType &Derivative) const override
MeasureType	GetValue (const TransformParametersType &parameters) const override
void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override
void	Initialize (void) override
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
virtual void	SetAlpha (double _arg)
void	SetANNbdTree (unsigned int bucketSize, std::string splittingRule, std::string shrinkingRule)
void	SetANNbdTree (unsigned int bucketSize, std::string splittingRuleFixed, std::string splittingRuleMoving, std::string splittingRuleJoint, std::string shrinkingRuleFixed, std::string shrinkingRuleMoving, std::string shrinkingRuleJoint)
void	SetANNBruteForceTree (void)
void	SetANNFixedRadiusTreeSearch (unsigned int kNearestNeighbors, double errorBound, double squaredRadius)
void	SetANNkDTree (unsigned int bucketSize, std::string splittingRule)
void	SetANNkDTree (unsigned int bucketSize, std::string splittingRuleFixed, std::string splittingRuleMoving, std::string splittingRuleJoint)
void	SetANNPriorityTreeSearch (unsigned int kNearestNeighbors, double errorBound)
void	SetANNStandardTreeSearch (unsigned int kNearestNeighbors, double errorBound)
virtual void	SetAvoidDivisionBy (double _arg)
Public Member Functions inherited from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >
virtual const char *	GetClassName () const
virtual const FixedImageType *	GetFixedImage (unsigned int pos) const
const FixedImageType *	GetFixedImage (void) const override
virtual FixedImageInterpolatorType *	GetFixedImageInterpolator (unsigned int pos) const
virtual FixedImageInterpolatorType *	GetFixedImageInterpolator (void) const
virtual FixedImageMaskType *	GetFixedImageMask (unsigned int pos) const
FixedImageMaskType *	GetFixedImageMask (void) const override
virtual const FixedImageRegionType &	GetFixedImageRegion (unsigned int pos) const
const FixedImageRegionType &	GetFixedImageRegion (void) const override
virtual InterpolatorType *	GetInterpolator (unsigned int pos) const
InterpolatorType *	GetInterpolator (void) const override
virtual bool	GetInterpolatorsAreBSpline () const
virtual const MovingImageType *	GetMovingImage (unsigned int pos) const
const MovingImageType *	GetMovingImage (void) const override
virtual MovingImageMaskType *	GetMovingImageMask (unsigned int pos) const
MovingImageMaskType *	GetMovingImageMask (void) const override
virtual unsigned int	GetNumberOfFixedImageInterpolators () const
virtual unsigned int	GetNumberOfFixedImageMasks () const
virtual unsigned int	GetNumberOfFixedImageRegions () const
virtual unsigned int	GetNumberOfFixedImages () const
virtual unsigned int	GetNumberOfInterpolators () const
virtual unsigned int	GetNumberOfMovingImageMasks () const
virtual unsigned int	GetNumberOfMovingImages () const
void	Initialize (void) override
	itkSetNumberOfMacro (FixedImage)
	itkSetNumberOfMacro (FixedImageInterpolator)
	itkSetNumberOfMacro (FixedImageMask)
	itkSetNumberOfMacro (FixedImageRegion)
	itkSetNumberOfMacro (Interpolator)
	itkSetNumberOfMacro (MovingImage)
	itkSetNumberOfMacro (MovingImageMask)
	itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)
void	SetFixedImage (const FixedImageType *_arg) override
virtual void	SetFixedImage (const FixedImageType *_arg, unsigned int pos)
virtual void	SetFixedImageInterpolator (FixedImageInterpolatorType *_arg)
virtual void	SetFixedImageInterpolator (FixedImageInterpolatorType *_arg, unsigned int pos)
void	SetFixedImageMask (FixedImageMaskType *_arg) override
virtual void	SetFixedImageMask (FixedImageMaskType *_arg, unsigned int pos)
void	SetFixedImageRegion (const FixedImageRegionType _arg) override
virtual void	SetFixedImageRegion (const FixedImageRegionType _arg, unsigned int pos)
void	SetInterpolator (InterpolatorType *_arg) override
virtual void	SetInterpolator (InterpolatorType *_arg, unsigned int pos)
void	SetMovingImage (const MovingImageType *_arg) override
virtual void	SetMovingImage (const MovingImageType *_arg, unsigned int pos)
void	SetMovingImageMask (MovingImageMaskType *_arg) override
virtual void	SetMovingImageMask (MovingImageMaskType *_arg, unsigned int pos)
Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
virtual const char *	GetClassName () const
virtual const FixedImageLimiterType *	GetFixedImageLimiter ()
virtual double	GetFixedLimitRangeRatio () const
virtual ImageSamplerType *	GetImageSampler (void) const
virtual const MovingImageDerivativeScalesType &	GetMovingImageDerivativeScales ()
virtual const MovingImageLimiterType *	GetMovingImageLimiter ()
virtual double	GetMovingLimitRangeRatio () const
virtual double	GetRequiredRatioOfValidSamples () const
virtual bool	GetScaleGradientWithRespectToMovingImageOrientation () const
virtual void	GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
const AdvancedTransformType *	GetTransform (void) const override
virtual bool	GetUseFixedImageLimiter () const
virtual bool	GetUseImageSampler () const
virtual const bool &	GetUseMetricSingleThreaded ()
virtual bool	GetUseMovingImageDerivativeScales () const
virtual bool	GetUseMovingImageLimiter () const
virtual const bool &	GetUseMultiThread ()
void	Initialize (void) override
	itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)
virtual void	SetFixedImageLimiter (FixedImageLimiterType *_arg)
virtual void	SetFixedLimitRangeRatio (double _arg)
virtual void	SetImageSampler (ImageSamplerType *_arg)
virtual void	SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
virtual void	SetMovingImageLimiter (MovingImageLimiterType *_arg)
virtual void	SetMovingLimitRangeRatio (double _arg)
virtual void	SetNumberOfWorkUnits (ThreadIdType numberOfThreads)
virtual void	SetRequiredRatioOfValidSamples (double _arg)
virtual void	SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)
virtual void	SetTransform (AdvancedTransformType *arg)
virtual void	SetUseMetricSingleThreaded (bool _arg)
virtual void	SetUseMovingImageDerivativeScales (bool _arg)
virtual void	SetUseMultiThread (bool _arg)
virtual void	UseMetricSingleThreadedOff ()
virtual void	UseMetricSingleThreadedOn ()
virtual void	UseMultiThreadOff ()
virtual void	UseMultiThreadOn ()

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	KNNGraphAlphaMutualInformationImageToImageMetric ()
void	PrintSelf (std::ostream &os, Indent indent) const override
	~KNNGraphAlphaMutualInformationImageToImageMetric () override
Protected Member Functions inherited from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >
virtual void	CheckForBSplineInterpolators (void)
bool	EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const override
void	InitializeImageSampler (void) override
bool	IsInsideMovingMask (const MovingImagePointType &mappedPoint) const override
	MultiInputImageToImageMetricBase ()
	~MultiInputImageToImageMetricBase () override
Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
	AdvancedImageToImageMetric ()
virtual void	AfterThreadedGetValue (MeasureType &value) const
virtual void	AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const
virtual void	CheckForAdvancedTransform (void)
virtual void	CheckForBSplineInterpolator (void)
virtual void	CheckForBSplineTransform (void) const
virtual void	CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
virtual bool	EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
virtual bool	EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
virtual void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const
virtual void	InitializeImageSampler (void)
virtual void	InitializeLimiters (void)
virtual void	InitializeThreadingParameters (void) const
virtual bool	IsInsideMovingMask (const MovingImagePointType &point) const
	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)
	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValuePerThreadStruct, AlignedGetValuePerThreadStruct)
	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)
	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValuePerThreadStruct, PaddedGetValuePerThreadStruct)
void	LaunchGetValueAndDerivativeThreaderCallback (void) const
void	LaunchGetValueThreaderCallback (void) const
void	PrintSelf (std::ostream &os, Indent indent) const override
virtual void	SetUseFixedImageLimiter (bool _arg)
virtual void	SetUseImageSampler (bool _arg)
virtual void	SetUseMovingImageLimiter (bool _arg)
virtual void	ThreadedGetValue (ThreadIdType threadID)
virtual void	ThreadedGetValueAndDerivative (ThreadIdType threadID)
virtual bool	TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const
	~AdvancedImageToImageMetric () override

Protected Attributes
double	m_Alpha
double	m_AvoidDivisionBy
BinaryKNNTreePointer	m_BinaryKNNTreeFixed
BinaryKNNTreePointer	m_BinaryKNNTreeJoint
BinaryKNNTreePointer	m_BinaryKNNTreeMoving
BinaryKNNTreeSearchPointer	m_BinaryKNNTreeSearcherFixed
BinaryKNNTreeSearchPointer	m_BinaryKNNTreeSearcherJoint
BinaryKNNTreeSearchPointer	m_BinaryKNNTreeSearcherMoving
Protected Attributes inherited from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >
BSplineInterpolatorVectorType	m_BSplineInterpolatorVector
FixedImageInterpolatorVectorType	m_FixedImageInterpolatorVector
FixedImageMaskVectorType	m_FixedImageMaskVector
FixedImageRegionVectorType	m_FixedImageRegionVector
FixedImageVectorType	m_FixedImageVector
bool	m_InterpolatorsAreBSpline
InterpolatorVectorType	m_InterpolatorVector
MovingImageMaskVectorType	m_MovingImageMaskVector
MovingImageVectorType	m_MovingImageVector
Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
AdvancedTransformType::Pointer	m_AdvancedTransform
BSplineInterpolatorPointer	m_BSplineInterpolator
BSplineInterpolatorFloatPointer	m_BSplineInterpolatorFloat
CentralDifferenceGradientFilterPointer	m_CentralDifferenceGradientFilter
FixedImageLimiterPointer	m_FixedImageLimiter
FixedImageLimiterOutputType	m_FixedImageMaxLimit
FixedImageLimiterOutputType	m_FixedImageMinLimit
FixedImagePixelType	m_FixedImageTrueMax
FixedImagePixelType	m_FixedImageTrueMin
double	m_FixedLimitRangeRatio
AlignedGetValueAndDerivativePerThreadStruct *	m_GetValueAndDerivativePerThreadVariables
ThreadIdType	m_GetValueAndDerivativePerThreadVariablesSize
AlignedGetValuePerThreadStruct *	m_GetValuePerThreadVariables
ThreadIdType	m_GetValuePerThreadVariablesSize
ImageSamplerPointer	m_ImageSampler
bool	m_InterpolatorIsBSpline
bool	m_InterpolatorIsBSplineFloat
bool	m_InterpolatorIsLinear
bool	m_InterpolatorIsReducedBSpline
LinearInterpolatorPointer	m_LinearInterpolator
MovingImageLimiterPointer	m_MovingImageLimiter
MovingImageLimiterOutputType	m_MovingImageMaxLimit
MovingImageLimiterOutputType	m_MovingImageMinLimit
MovingImagePixelType	m_MovingImageTrueMax
MovingImagePixelType	m_MovingImageTrueMin
double	m_MovingLimitRangeRatio
ReducedBSplineInterpolatorPointer	m_ReducedBSplineInterpolator
MultiThreaderParameterType	m_ThreaderMetricParameters
bool	m_TransformIsAdvanced
bool	m_TransformIsBSpline
bool	m_UseMetricSingleThreaded
bool	m_UseMultiThread
bool	m_UseOpenMP

Private Types
typedef Superclass::FixedImagePointType	FixedImagePointType
typedef Superclass::MovingImageContinuousIndexType	MovingImageContinuousIndexType
typedef Superclass::MovingImageDerivativeType	MovingImageDerivativeType
typedef Superclass::MovingImagePointType	MovingImagePointType
typedef std::vector< SpatialDerivativeType >	SpatialDerivativeContainerType
typedef Array2D< double >	SpatialDerivativeType
typedef std::vector< TransformJacobianType >	TransformJacobianContainerType
typedef std::vector< NonZeroJacobianIndicesType >	TransformJacobianIndicesContainerType

Private Member Functions
virtual void	ComputeListSampleValuesAndDerivativePlusJacobian (const ListSamplePointer &listSampleFixed, const ListSamplePointer &listSampleMoving, const ListSamplePointer &listSampleJoint, const bool &doDerivative, TransformJacobianContainerType &jacobians, TransformJacobianIndicesContainerType &jacobiansIndices, SpatialDerivativeContainerType &spatialDerivatives) const
virtual void	EvaluateMovingFeatureImageDerivatives (const MovingImagePointType &mappedPoint, SpatialDerivativeType &featureGradients) const
	KNNGraphAlphaMutualInformationImageToImageMetric (const Self &)
void	operator= (const Self &)
virtual void	UpdateDerivativeOfGammas (const SpatialDerivativeType &D1sparse, const SpatialDerivativeType &D2sparse_M, const SpatialDerivativeType &D2sparse_J, const NonZeroJacobianIndicesType &D1indices, const NonZeroJacobianIndicesType &D2indices_M, const NonZeroJacobianIndicesType &D2indices_J, const MeasurementVectorType &diff_M, const MeasurementVectorType &diff_J, const MeasureType &distance_M, const MeasureType &distance_J, DerivativeType &dGamma_M, DerivativeType &dGamma_J) const

Additional Inherited Members
Protected Types inherited from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >
typedef BSplineInterpolatorType::Pointer	BSplineInterpolatorPointer
typedef Superclass::BSplineInterpolatorType	BSplineInterpolatorType
typedef std::vector< BSplineInterpolatorPointer >	BSplineInterpolatorVectorType
typedef Superclass::MovingImageContinuousIndexType	MovingImageContinuousIndexType
typedef Superclass::MovingImageDerivativeType	MovingImageDerivativeType
typedef Superclass::MovingImageIndexType	MovingImageIndexType
typedef Superclass::MovingImagePointType	MovingImagePointType
Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
typedef BSplineInterpolatorFloatType::Pointer	BSplineInterpolatorFloatPointer
typedef BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, float >	BSplineInterpolatorFloatType
typedef BSplineInterpolatorType::Pointer	BSplineInterpolatorPointer
typedef BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >	BSplineInterpolatorType
typedef CentralDifferenceGradientFilterType::Pointer	CentralDifferenceGradientFilterPointer
typedef GradientImageFilter< MovingImageType, RealType, RealType >	CentralDifferenceGradientFilterType
typedef FixedImageType::IndexType	FixedImageIndexType
typedef FixedImageIndexType::IndexValueType	FixedImageIndexValueType
typedef TransformType::InputPointType	FixedImagePointType
typedef LinearInterpolatorType::Pointer	LinearInterpolatorPointer
typedef AdvancedLinearInterpolateImageFunction< MovingImageType, CoordinateRepresentationType >	LinearInterpolatorType
typedef InterpolatorType::ContinuousIndexType	MovingImageContinuousIndexType
typedef BSplineInterpolatorType::CovariantVectorType	MovingImageDerivativeType
typedef MovingImageType::IndexType	MovingImageIndexType
typedef TransformType::OutputPointType	MovingImagePointType
typedef AdvancedTransformType::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
typedef ReducedBSplineInterpolatorType::Pointer	ReducedBSplineInterpolatorPointer
typedef ReducedDimensionBSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >	ReducedBSplineInterpolatorType
Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	AccumulateDerivativesThreaderCallback (void *arg)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeThreaderCallback (void *arg)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueThreaderCallback (void *arg)

Member Typedef Documentation

ANNbdTreeType

template<class TFixedImage , class TMovingImage >

typedef ANNbdTree< ListSampleType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNbdTreeType

Definition at line 162 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

ANNBruteForceTreeType

template<class TFixedImage , class TMovingImage >

typedef ANNBruteForceTree< ListSampleType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNBruteForceTreeType

Definition at line 163 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

ANNFixedRadiusTreeSearchType

template<class TFixedImage , class TMovingImage >

typedef ANNFixedRadiusTreeSearch< ListSampleType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNFixedRadiusTreeSearchType

Definition at line 169 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

ANNkDTreeType

template<class TFixedImage , class TMovingImage >

typedef ANNkDTree< ListSampleType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNkDTreeType

Definition at line 161 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

ANNPriorityTreeSearchType

template<class TFixedImage , class TMovingImage >

typedef ANNPriorityTreeSearch< ListSampleType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNPriorityTreeSearchType

Definition at line 170 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

ANNStandardTreeSearchType

template<class TFixedImage , class TMovingImage >

typedef ANNStandardTreeSearch< ListSampleType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNStandardTreeSearchType

Definition at line 168 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

BinaryKNNTreePointer

template<class TFixedImage , class TMovingImage >

typedef BinaryKNNTreeType::Pointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::BinaryKNNTreePointer

Definition at line 160 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

BinaryKNNTreeSearchPointer

template<class TFixedImage , class TMovingImage >

typedef BinaryKNNTreeSearchType::Pointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::BinaryKNNTreeSearchPointer

Definition at line 167 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

BinaryKNNTreeSearchType

template<class TFixedImage , class TMovingImage >

typedef BinaryTreeSearchBase< ListSampleType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::BinaryKNNTreeSearchType

Typedefs for tree searchers.

Definition at line 166 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

BinaryKNNTreeType

template<class TFixedImage , class TMovingImage >

typedef BinaryTreeBase< ListSampleType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::BinaryKNNTreeType

Typedefs for trees.

Definition at line 159 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

ConstPointer

template<class TFixedImage , class TMovingImage >

typedef SmartPointer< const Self > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ConstPointer

Definition at line 84 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

CoordinateRepresentationType

template<class TFixedImage , class TMovingImage >

typedef Superclass::CoordinateRepresentationType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::CoordinateRepresentationType

Typedefs from the superclass.

Definition at line 95 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

DerivativeType

template<class TFixedImage , class TMovingImage >

typedef Superclass::DerivativeType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::DerivativeType

Definition at line 121 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

DerivativeValueType

template<class TFixedImage , class TMovingImage >

typedef DerivativeType::ValueType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::DerivativeValueType

Definition at line 175 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

DistanceArrayType

template<class TFixedImage , class TMovingImage >

typedef BinaryKNNTreeSearchType::DistanceArrayType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::DistanceArrayType

Definition at line 173 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

FixedImageConstPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageConstPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageConstPointer

Definition at line 100 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

FixedImageInterpolatorVectorType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageInterpolatorVectorType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageInterpolatorVectorType

Definition at line 145 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

FixedImageLimiterOutputType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageLimiterOutputType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterOutputType

Definition at line 133 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

FixedImageLimiterType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageLimiterType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterType

Definition at line 130 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

FixedImageMaskPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageMaskPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskPointer

Definition at line 117 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

FixedImageMaskType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageMaskType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskType

Definition at line 116 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

FixedImageMaskVectorType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageMaskVectorType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskVectorType

Definition at line 140 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

FixedImagePixelType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImagePixelType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePixelType

Definition at line 123 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

FixedImagePointType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImagePointType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePointType

private

Typedef's for the computation of the derivative.

Definition at line 279 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

FixedImageRegionType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageRegionType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageRegionType

Definition at line 101 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

FixedImageRegionVectorType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageRegionVectorType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageRegionVectorType

Definition at line 141 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

FixedImageType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageType

Definition at line 99 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

FixedImageVectorType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageVectorType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageVectorType

Typedef's for storing multiple inputs.

Definition at line 139 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

GradientImageFilterPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientImageFilterPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterPointer

Definition at line 115 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

GradientImageFilterType

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientImageFilterType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterType

Definition at line 114 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

GradientImagePointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientImagePointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientImagePointer

Definition at line 113 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

GradientImageType

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientImageType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientImageType

Definition at line 112 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

GradientPixelType

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientPixelType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientPixelType

Definition at line 111 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

ImageSampleContainerPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::ImageSampleContainerPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerPointer

Definition at line 129 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

ImageSampleContainerType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ImageSampleContainerType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerType

Definition at line 127 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

ImageSamplerPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::ImageSamplerPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerPointer

Definition at line 126 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

ImageSamplerType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ImageSamplerType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerType

Definition at line 125 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

IndexArrayType

template<class TFixedImage , class TMovingImage >

typedef BinaryKNNTreeSearchType::IndexArrayType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::IndexArrayType

Definition at line 172 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

InputPointType

template<class TFixedImage , class TMovingImage >

typedef Superclass::InputPointType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::InputPointType

Definition at line 104 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

InterpolatorPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::InterpolatorPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorPointer

Definition at line 109 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

InterpolatorType

template<class TFixedImage , class TMovingImage >

typedef Superclass::InterpolatorType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorType

Definition at line 108 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

InterpolatorVectorType

template<class TFixedImage , class TMovingImage >

typedef Superclass::InterpolatorVectorType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorVectorType

Definition at line 144 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

ListSamplePointer

template<class TFixedImage , class TMovingImage >

typedef ListSampleType::Pointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ListSamplePointer

Definition at line 156 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

ListSampleType

template<class TFixedImage , class TMovingImage >

typedef Statistics::ListSampleCArray< MeasurementVectorType, double > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ListSampleType

Definition at line 155 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

MeasurementVectorType

template<class TFixedImage , class TMovingImage >

typedef Array< double > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MeasurementVectorType

Typedefs for the samples.

Definition at line 152 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

MeasurementVectorValueType

template<class TFixedImage , class TMovingImage >

typedef MeasurementVectorType::ValueType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MeasurementVectorValueType

Definition at line 153 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

MeasureType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MeasureType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MeasureType

Definition at line 120 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

MovingImageConstPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageConstPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageConstPointer

Definition at line 98 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

MovingImageContinuousIndexType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageContinuousIndexType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageContinuousIndexType

private

Definition at line 282 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

MovingImageDerivativeType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageDerivativeType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeType

private

Definition at line 281 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

MovingImageLimiterOutputType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageLimiterOutputType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterOutputType

Definition at line 135 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

MovingImageLimiterType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageLimiterType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterType

Definition at line 131 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

MovingImageMaskPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageMaskPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskPointer

Definition at line 119 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

MovingImageMaskType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageMaskType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskType

Definition at line 118 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

MovingImageMaskVectorType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageMaskVectorType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskVectorType

Definition at line 143 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

MovingImagePixelType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImagePixelType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePixelType

Definition at line 97 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

MovingImagePointType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImagePointType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePointType

private

Definition at line 280 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

MovingImageRegionType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageRegionType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageRegionType

Definition at line 124 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

MovingImageType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageType

Definition at line 96 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

MovingImageVectorType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageVectorType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageVectorType

Definition at line 142 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

NonZeroJacobianIndicesType

template<class TFixedImage , class TMovingImage >

typedef Superclass::NonZeroJacobianIndicesType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::NonZeroJacobianIndicesType

Definition at line 136 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

OutputPointType

template<class TFixedImage , class TMovingImage >

typedef Superclass::OutputPointType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::OutputPointType

Definition at line 105 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

ParametersType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ParametersType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ParametersType

Definition at line 122 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

Pointer

template<class TFixedImage , class TMovingImage >

typedef SmartPointer< Self > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Pointer

Definition at line 83 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

RealType

template<class TFixedImage , class TMovingImage >

typedef Superclass::RealType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::RealType

Definition at line 110 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

Self

template<class TFixedImage , class TMovingImage >

typedef KNNGraphAlphaMutualInformationImageToImageMetric itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Self

Standard itk.

Definition at line 80 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

SpatialDerivativeContainerType

template<class TFixedImage , class TMovingImage >

typedef std::vector< SpatialDerivativeType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SpatialDerivativeContainerType

private

Definition at line 287 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

SpatialDerivativeType

template<class TFixedImage , class TMovingImage >

typedef Array2D< double > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SpatialDerivativeType

private

Definition at line 286 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

Superclass

template<class TFixedImage , class TMovingImage >

typedef MultiInputImageToImageMetricBase< TFixedImage, TMovingImage > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Superclass

Definition at line 82 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

TransformJacobianContainerType

template<class TFixedImage , class TMovingImage >

typedef std::vector< TransformJacobianType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianContainerType

private

Definition at line 283 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

TransformJacobianIndicesContainerType

template<class TFixedImage , class TMovingImage >

typedef std::vector< NonZeroJacobianIndicesType > itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianIndicesContainerType

private

Definition at line 285 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

TransformJacobianType

template<class TFixedImage , class TMovingImage >

typedef Superclass::TransformJacobianType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianType

Definition at line 107 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

TransformJacobianValueType

template<class TFixedImage , class TMovingImage >

typedef TransformJacobianType::ValueType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianValueType

Definition at line 176 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

TransformParametersType

template<class TFixedImage , class TMovingImage >

typedef Superclass::TransformParametersType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformParametersType

Definition at line 106 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

TransformPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::TransformPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformPointer

Definition at line 103 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

TransformType

template<class TFixedImage , class TMovingImage >

typedef Superclass::TransformType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformType

Definition at line 102 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

Constructor & Destructor Documentation

KNNGraphAlphaMutualInformationImageToImageMetric() [1/2]

template<class TFixedImage , class TMovingImage >

itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::KNNGraphAlphaMutualInformationImageToImageMetric ( )

protected

Constructor.

~KNNGraphAlphaMutualInformationImageToImageMetric()

template<class TFixedImage , class TMovingImage >

itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::~KNNGraphAlphaMutualInformationImageToImageMetric ( )

inlineoverrideprotected

Destructor.

Definition at line 256 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

KNNGraphAlphaMutualInformationImageToImageMetric() [2/2]

template<class TFixedImage , class TMovingImage >

itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::KNNGraphAlphaMutualInformationImageToImageMetric ( const Self &  )

private

Member Function Documentation

ComputeListSampleValuesAndDerivativePlusJacobian()

template<class TFixedImage , class TMovingImage >

virtual void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ComputeListSampleValuesAndDerivativePlusJacobian ( const ListSamplePointer &  listSampleFixed, const ListSamplePointer &  listSampleMoving, const ListSamplePointer &  listSampleJoint, const bool &  doDerivative, TransformJacobianContainerType &  jacobians, TransformJacobianIndicesContainerType &  jacobiansIndices, SpatialDerivativeContainerType &  spatialDerivatives  ) const

privatevirtual

This function takes the fixed image samples from the ImageSampler and puts them in the listSampleFixed, together with the fixed feature image samples. Also the corresponding moving image values and moving feature values are computed and put into listSampleMoving. The concatenation is put into listSampleJoint. If desired, i.e. if doDerivative is true, then also things needed to compute the derivative of the cost function to the transform parameters are computed:

• The sparse Jacobian of the transformation (dT/dmu).
• The spatial derivatives of the moving (feature) images (dm/dx).

EvaluateMovingFeatureImageDerivatives()

template<class TFixedImage , class TMovingImage >

virtual void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::EvaluateMovingFeatureImageDerivatives ( const MovingImagePointType &  mappedPoint, SpatialDerivativeType &  featureGradients  ) const

privatevirtual

This function calculates the spatial derivative of the featureNr feature image at the point mappedPoint.

Todo:

move this to base class.

GetAlpha()

template<class TFixedImage , class TMovingImage >

virtual const double & itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetAlpha ( )

virtual

Get alpha from alpha - mutual information.

GetAvoidDivisionBy()

template<class TFixedImage , class TMovingImage >

virtual const double & itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetAvoidDivisionBy ( )

virtual

Avoid division by a small number.

GetClassName()

template<class TFixedImage , class TMovingImage >

virtual const char * itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >.

Reimplemented in elastix::KNNGraphAlphaMutualInformationMetric< TElastix >.

GetDerivative()

template<class TFixedImage , class TMovingImage >

void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetDerivative ( const TransformParametersType &  parameters, DerivativeType &  Derivative  ) const

override

Get the derivatives of the match measure.

GetValue()

template<class TFixedImage , class TMovingImage >

MeasureType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValue ( const TransformParametersType &  parameters ) const

override

Get the value for single valued optimizers.

GetValueAndDerivative()

template<class TFixedImage , class TMovingImage >

void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivative ( const TransformParametersType &  parameters, MeasureType &  Value, DerivativeType &  Derivative  ) const

override

Get value and derivatives for multiple valued optimizers.

Initialize()

template<class TFixedImage , class TMovingImage >

void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Initialize ( void  )

override

*** Standard metric stuff: *** Initialize the metric.

itkStaticConstMacro() [1/2]

template<class TFixedImage , class TMovingImage >

itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension
	)

The fixed image dimension.

itkStaticConstMacro() [2/2]

template<class TFixedImage , class TMovingImage >

itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		MovingImageType::ImageDimension
	)

New()

template<class TFixedImage , class TMovingImage >

static Pointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::New ( )

static

Method for creation through the object factory.

operator=()

template<class TFixedImage , class TMovingImage >

void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::operator= ( const Self &  )

private

PrintSelf()

template<class TFixedImage , class TMovingImage >

void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotected

PrintSelf.

SetAlpha()

template<class TFixedImage , class TMovingImage >

virtual void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetAlpha ( double  _arg )

virtual

Set alpha from alpha - mutual information.

SetANNbdTree() [1/2]

template<class TFixedImage , class TMovingImage >

void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNbdTree	(	unsigned int	bucketSize,
		std::string	splittingRule,
		std::string	shrinkingRule
	)

Set ANNbdTree.

SetANNbdTree() [2/2]

template<class TFixedImage , class TMovingImage >

void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNbdTree	(	unsigned int	bucketSize,
		std::string	splittingRuleFixed,
		std::string	splittingRuleMoving,
		std::string	splittingRuleJoint,
		std::string	shrinkingRuleFixed,
		std::string	shrinkingRuleMoving,
		std::string	shrinkingRuleJoint
	)

Set ANNbdTree.

SetANNBruteForceTree()

template<class TFixedImage , class TMovingImage >

void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNBruteForceTree

(

void

)

Set ANNBruteForceTree.

SetANNFixedRadiusTreeSearch()

template<class TFixedImage , class TMovingImage >

void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNFixedRadiusTreeSearch	(	unsigned int	kNearestNeighbors,
		double	errorBound,
		double	squaredRadius
	)

Set ANNFixedRadiusTreeSearch.

SetANNkDTree() [1/2]

template<class TFixedImage , class TMovingImage >

void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNkDTree	(	unsigned int	bucketSize,
		std::string	splittingRule
	)

*** Set trees: *** Currently kd, bd, and brute force trees are supported. Set ANNkDTree.

SetANNkDTree() [2/2]

template<class TFixedImage , class TMovingImage >

void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNkDTree	(	unsigned int	bucketSize,
		std::string	splittingRuleFixed,
		std::string	splittingRuleMoving,
		std::string	splittingRuleJoint
	)

Set ANNkDTree.

SetANNPriorityTreeSearch()

template<class TFixedImage , class TMovingImage >

void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNPriorityTreeSearch	(	unsigned int	kNearestNeighbors,
		double	errorBound
	)

Set ANNPriorityTreeSearch.

SetANNStandardTreeSearch()

template<class TFixedImage , class TMovingImage >

void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNStandardTreeSearch	(	unsigned int	kNearestNeighbors,
		double	errorBound
	)

*** Set tree searchers: *** Currently standard, fixed radius, and priority tree searchers are supported. Set ANNStandardTreeSearch.

SetAvoidDivisionBy()

template<class TFixedImage , class TMovingImage >

virtual void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetAvoidDivisionBy ( double  _arg )

virtual

Avoid division by a small number.

UpdateDerivativeOfGammas()

template<class TFixedImage , class TMovingImage >

virtual void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::UpdateDerivativeOfGammas ( const SpatialDerivativeType &  D1sparse, const SpatialDerivativeType &  D2sparse_M, const SpatialDerivativeType &  D2sparse_J, const NonZeroJacobianIndicesType &  D1indices, const NonZeroJacobianIndicesType &  D2indices_M, const NonZeroJacobianIndicesType &  D2indices_J, const MeasurementVectorType &  diff_M, const MeasurementVectorType &  diff_J, const MeasureType &  distance_M, const MeasureType &  distance_J, DerivativeType &  dGamma_M, DerivativeType &  dGamma_J  ) const

privatevirtual

This function essentially computes D1 - D2, but also takes care of going from a sparse matrix (hence the indices) to a full sized matrix.

Field Documentation

m_Alpha

template<class TFixedImage , class TMovingImage >

double itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_Alpha

protected

Definition at line 270 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

m_AvoidDivisionBy

template<class TFixedImage , class TMovingImage >

double itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_AvoidDivisionBy

protected

Definition at line 271 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

m_BinaryKNNTreeFixed

template<class TFixedImage , class TMovingImage >

BinaryKNNTreePointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeFixed

protected

Member variables.

Definition at line 262 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

m_BinaryKNNTreeJoint

template<class TFixedImage , class TMovingImage >

BinaryKNNTreePointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeJoint

protected

Definition at line 264 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

m_BinaryKNNTreeMoving

template<class TFixedImage , class TMovingImage >

BinaryKNNTreePointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeMoving

protected

Definition at line 263 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

m_BinaryKNNTreeSearcherFixed

template<class TFixedImage , class TMovingImage >

BinaryKNNTreeSearchPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeSearcherFixed

protected

Definition at line 266 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

m_BinaryKNNTreeSearcherJoint

template<class TFixedImage , class TMovingImage >

BinaryKNNTreeSearchPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeSearcherJoint

protected

Definition at line 268 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

m_BinaryKNNTreeSearcherMoving

template<class TFixedImage , class TMovingImage >

BinaryKNNTreeSearchPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeSearcherMoving

protected

Definition at line 267 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.