elastix::ResamplerBase< TElastix > Class Template Reference

#include <elxResamplerBase.h>

Detailed Description

template<class TElastix>
class elastix::ResamplerBase< TElastix >

Definition at line 73 of file elxResamplerBase.h.

Inheritance diagram for elastix::ResamplerBase< TElastix >:

Public Types
typedef Superclass::ConfigurationPointer	ConfigurationPointer
typedef Superclass::ConfigurationType	ConfigurationType
typedef ElastixType::CoordRepType	CoordRepType
typedef ITKBaseType::DirectionType	DirectionType
typedef Superclass::ElastixPointer	ElastixPointer
typedef Superclass::ElastixType	ElastixType
typedef ITKBaseType::IndexType	IndexType
typedef ElastixType::MovingImageType	InputImageType
typedef ITKBaseType::InterpolatorType	InterpolatorType
typedef itk::ResampleImageFilter< InputImageType, OutputImageType, CoordRepType >	ITKBaseType
typedef ITKBaseType::OriginPointType	OriginPointType
typedef ElastixType::MovingImageType	OutputImageType
typedef ITKBaseType::PixelType	OutputPixelType
typedef ElastixType::ParameterMapType	ParameterMapType
typedef elx::ProgressCommand	ProgressCommandType
typedef Superclass::RegistrationPointer	RegistrationPointer
typedef Superclass::RegistrationType	RegistrationType
typedef ResamplerBase	Self
typedef ITKBaseType::SizeType	SizeType
typedef ITKBaseType::SpacingType	SpacingType
typedef BaseComponentSE< TElastix >	Superclass
typedef ITKBaseType::TransformType	TransformType
Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef Configuration::Pointer	ConfigurationPointer
typedef Configuration	ConfigurationType
typedef itk::WeakPointer< ElastixType >	ElastixPointer
typedef TElastix	ElastixType
typedef RegistrationType *	RegistrationPointer
typedef ElastixType::RegistrationBaseType	RegistrationType
typedef BaseComponentSE	Self
typedef BaseComponent	Superclass

Public Member Functions
void	AfterEachIterationBase (void) override
void	AfterEachResolutionBase (void) override
void	AfterRegistrationBase (void) override
virtual int	BeforeAllTransformix (void)
void	BeforeRegistrationBase (void) override
virtual void	CreateItkResultImage (void)
virtual void	CreateTransformParametersMap (ParameterMapType *paramsMap) const
virtual ITKBaseType *	GetAsITKBaseType (void)
virtual const ITKBaseType *	GetAsITKBaseType (void) const
virtual const char *	GetClassName () const
	itkStaticConstMacro (ImageDimension, unsigned int, OutputImageType::ImageDimension)
virtual void	ReadFromFile (void)
virtual void	ResampleAndWriteResultImage (const char *filename, const bool &showProgress=true)
virtual void	WriteResultImage (OutputImageType *imageimage, const char *filename, const bool &showProgress=true)
virtual void	WriteToFile (void) const
Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
ConfigurationType *	GetConfiguration (void) const
ElastixType *	GetElastix (void) const
RegistrationPointer	GetRegistration (void) const
	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponentSE)
void	SetConfiguration (ConfigurationType *_arg)
void	SetElastix (ElastixType *_arg)
Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration (void)
virtual void	AfterEachIterationBase (void)
virtual void	AfterEachResolution (void)
virtual void	AfterEachResolutionBase (void)
virtual void	AfterRegistration (void)
virtual void	AfterRegistrationBase (void)
virtual int	BeforeAll (void)
virtual int	BeforeAllBase (void)
virtual void	BeforeEachResolution (void)
virtual void	BeforeEachResolutionBase (void)
virtual void	BeforeRegistration (void)
virtual void	BeforeRegistrationBase (void)
virtual const char *	elxGetClassName (void) const
const char *	GetComponentLabel (void) const
	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponent)
	itkTypeMacroNoParent (BaseComponent)
void	SetComponentLabel (const char *label, unsigned int idx)

Protected Member Functions
	ResamplerBase ()
virtual void	SetComponents (void)
	~ResamplerBase () override
Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default
	~BaseComponentSE () override=default
Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default
virtual	~BaseComponent ()=default

Protected Attributes
bool	m_ShowProgress
Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration {}
ElastixPointer	m_Elastix {}
RegistrationPointer	m_Registration {}

Private Member Functions
void	operator= (const Self &)
void	ReleaseMemory (void)
	ResamplerBase (const Self &)

Additional Inherited Members
Static Public Member Functions inherited from elastix::BaseComponent
static std::string	ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision)
static void	InitializeElastixExecutable ()
static bool	IsElastixLibrary ()

Member Typedef Documentation

ConfigurationPointer

template<class TElastix >

typedef Superclass::ConfigurationPointer elastix::ResamplerBase< TElastix >::ConfigurationPointer

Definition at line 88 of file elxResamplerBase.h.

ConfigurationType

template<class TElastix >

typedef Superclass::ConfigurationType elastix::ResamplerBase< TElastix >::ConfigurationType

Definition at line 87 of file elxResamplerBase.h.

CoordRepType

template<class TElastix >

typedef ElastixType::CoordRepType elastix::ResamplerBase< TElastix >::CoordRepType

Definition at line 97 of file elxResamplerBase.h.

DirectionType

template<class TElastix >

typedef ITKBaseType::DirectionType elastix::ResamplerBase< TElastix >::DirectionType

Definition at line 109 of file elxResamplerBase.h.

ElastixPointer

template<class TElastix >

typedef Superclass::ElastixPointer elastix::ResamplerBase< TElastix >::ElastixPointer

Definition at line 86 of file elxResamplerBase.h.

ElastixType

template<class TElastix >

typedef Superclass::ElastixType elastix::ResamplerBase< TElastix >::ElastixType

Typedef's from superclass.

Definition at line 85 of file elxResamplerBase.h.

IndexType

template<class TElastix >

typedef ITKBaseType::IndexType elastix::ResamplerBase< TElastix >::IndexType

Definition at line 107 of file elxResamplerBase.h.

InputImageType

template<class TElastix >

typedef ElastixType::MovingImageType elastix::ResamplerBase< TElastix >::InputImageType

Typedef's from elastix. NB: it is assumed that fixed and moving image dimension are equal!

Definition at line 94 of file elxResamplerBase.h.

InterpolatorType

template<class TElastix >

typedef ITKBaseType::InterpolatorType elastix::ResamplerBase< TElastix >::InterpolatorType

Definition at line 105 of file elxResamplerBase.h.

ITKBaseType

template<class TElastix >

typedef itk::ResampleImageFilter< InputImageType, OutputImageType, CoordRepType > elastix::ResamplerBase< TElastix >::ITKBaseType

Other typedef's.

Definition at line 101 of file elxResamplerBase.h.

OriginPointType

template<class TElastix >

typedef ITKBaseType::OriginPointType elastix::ResamplerBase< TElastix >::OriginPointType

Definition at line 110 of file elxResamplerBase.h.

OutputImageType

template<class TElastix >

typedef ElastixType::MovingImageType elastix::ResamplerBase< TElastix >::OutputImageType

Definition at line 95 of file elxResamplerBase.h.

OutputPixelType

template<class TElastix >

typedef ITKBaseType::PixelType elastix::ResamplerBase< TElastix >::OutputPixelType

Definition at line 111 of file elxResamplerBase.h.

ParameterMapType

template<class TElastix >

typedef ElastixType::ParameterMapType elastix::ResamplerBase< TElastix >::ParameterMapType

Typedef that is used in the elastix dll version.

Definition at line 114 of file elxResamplerBase.h.

ProgressCommandType

template<class TElastix >

typedef elx::ProgressCommand elastix::ResamplerBase< TElastix >::ProgressCommandType

Typedef for the ProgressCommand.

Definition at line 117 of file elxResamplerBase.h.

RegistrationPointer

template<class TElastix >

typedef Superclass::RegistrationPointer elastix::ResamplerBase< TElastix >::RegistrationPointer

Definition at line 90 of file elxResamplerBase.h.

RegistrationType

template<class TElastix >

typedef Superclass::RegistrationType elastix::ResamplerBase< TElastix >::RegistrationType

Definition at line 89 of file elxResamplerBase.h.

Self

template<class TElastix >

typedef ResamplerBase elastix::ResamplerBase< TElastix >::Self

Standard ITK stuff.

Definition at line 78 of file elxResamplerBase.h.

SizeType

template<class TElastix >

typedef ITKBaseType::SizeType elastix::ResamplerBase< TElastix >::SizeType

Definition at line 106 of file elxResamplerBase.h.

SpacingType

template<class TElastix >

typedef ITKBaseType::SpacingType elastix::ResamplerBase< TElastix >::SpacingType

Definition at line 108 of file elxResamplerBase.h.

Superclass

template<class TElastix >

typedef BaseComponentSE< TElastix > elastix::ResamplerBase< TElastix >::Superclass

Definition at line 79 of file elxResamplerBase.h.

TransformType

template<class TElastix >

typedef ITKBaseType::TransformType elastix::ResamplerBase< TElastix >::TransformType

Typedef's from ResampleImageFiler.

Definition at line 104 of file elxResamplerBase.h.

Constructor & Destructor Documentation

ResamplerBase() [1/2]

template<class TElastix >

elastix::ResamplerBase< TElastix >::ResamplerBase ( )

protected

The constructor.

~ResamplerBase()

template<class TElastix >

elastix::ResamplerBase< TElastix >::~ResamplerBase ( )

inlineoverrideprotected

The destructor.

Definition at line 189 of file elxResamplerBase.h.

ResamplerBase() [2/2]

template<class TElastix >

elastix::ResamplerBase< TElastix >::ResamplerBase ( const Self &  )

private

The private constructor.

Member Function Documentation

AfterEachIterationBase()

template<class TElastix >

void elastix::ResamplerBase< TElastix >::AfterEachIterationBase ( void  )

overridevirtual

Execute stuff after each iteration:

• Write the resulting output image.

Reimplemented from elastix::BaseComponent.

AfterEachResolutionBase()

template<class TElastix >

void elastix::ResamplerBase< TElastix >::AfterEachResolutionBase ( void  )

overridevirtual

Execute stuff after each resolution:

• Write the resulting output image.

Reimplemented from elastix::BaseComponent.

AfterRegistrationBase()

template<class TElastix >

void elastix::ResamplerBase< TElastix >::AfterRegistrationBase ( void  )

overridevirtual

Execute stuff after the registration:

• Write the resulting output image.

Reimplemented from elastix::BaseComponent.

BeforeAllTransformix()

template<class TElastix >

virtual int elastix::ResamplerBase< TElastix >::BeforeAllTransformix ( void  )

inlinevirtual

Execute stuff before the actual transformation:

• nothing here

Definition at line 140 of file elxResamplerBase.h.

BeforeRegistrationBase()

template<class TElastix >

void elastix::ResamplerBase< TElastix >::BeforeRegistrationBase ( void  )

overridevirtual

Execute stuff before the actual registration:

• Set all components into the resampler, such as the transform interpolator, input.
• Set output image information, such as size, spacing, etc.
• Set the default pixel value.

Reimplemented from elastix::BaseComponent.

CreateItkResultImage()

template<class TElastix >

virtual void elastix::ResamplerBase< TElastix >::CreateItkResultImage ( void  )

virtual

Function to create the result image in the format of an itk::Image.

CreateTransformParametersMap()

template<class TElastix >

virtual void elastix::ResamplerBase< TElastix >::CreateTransformParametersMap ( ParameterMapType *  paramsMap ) const

virtual

Function to create transform-parameters map.

GetAsITKBaseType() [1/2]

template<class TElastix >

virtual ITKBaseType * elastix::ResamplerBase< TElastix >::GetAsITKBaseType ( void  )

inlinevirtual

Cast to ITKBaseType.

Definition at line 124 of file elxResamplerBase.h.

GetAsITKBaseType() [2/2]

template<class TElastix >

virtual const ITKBaseType * elastix::ResamplerBase< TElastix >::GetAsITKBaseType ( void  ) const

inlinevirtual

Cast to ITKBaseType, to use in const functions.

Definition at line 131 of file elxResamplerBase.h.

GetClassName()

template<class TElastix >

virtual const char * elastix::ResamplerBase< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented in elastix::MyStandardResampler< TElastix >, and elastix::OpenCLResampler< TElastix >.

itkStaticConstMacro()

template<class TElastix >

elastix::ResamplerBase< TElastix >::itkStaticConstMacro	(	ImageDimension	,
		unsigned int	,
		OutputImageType::ImageDimension
	)

Get the ImageDimension.

operator=()

template<class TElastix >

void elastix::ResamplerBase< TElastix >::operator= ( const Self &  )

private

The private copy constructor.

ReadFromFile()

template<class TElastix >

virtual void elastix::ResamplerBase< TElastix >::ReadFromFile ( void  )

virtual

Function to read transform-parameters from a file.

Reimplemented in elastix::OpenCLResampler< TElastix >.

ReleaseMemory()

template<class TElastix >

void elastix::ResamplerBase< TElastix >::ReleaseMemory ( void  )

private

Release memory.

ResampleAndWriteResultImage()

template<class TElastix >

virtual void elastix::ResamplerBase< TElastix >::ResampleAndWriteResultImage ( const char *  filename, const bool &  showProgress = true  )

virtual

Function to perform resample and write the result output image to a file.

SetComponents()

template<class TElastix >

virtual void elastix::ResamplerBase< TElastix >::SetComponents ( void  )

protectedvirtual

Method that sets the transform, the interpolator and the inputImage.

WriteResultImage()

template<class TElastix >

virtual void elastix::ResamplerBase< TElastix >::WriteResultImage ( OutputImageType *  imageimage, const char *  filename, const bool &  showProgress = true  )

virtual

Function to write the result output image to a file.

WriteToFile()

template<class TElastix >

virtual void elastix::ResamplerBase< TElastix >::WriteToFile ( void  ) const

virtual

Function to write transform-parameters to a file.

Reimplemented in elastix::OpenCLResampler< TElastix >.

Field Documentation

m_ShowProgress

template<class TElastix >

bool elastix::ResamplerBase< TElastix >::m_ShowProgress

protected

Variable that defines to print the progress or not.

Definition at line 195 of file elxResamplerBase.h.