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elastix::FixedGenericPyramid< TElastix > Class Template Reference

#include <elxFixedGenericPyramid.h>

Detailed Description

template<class TElastix>
class elastix::FixedGenericPyramid< TElastix >

A pyramid based on the itk::GenericMultiResolutionPyramidImageFilter.

It is generic since it has all functionality that the FixedRecursivePyramid, FixedShrinkingPyramid and FixedSmoothingPyramid have together. This pyramid has two separate schedules: one for size rescaling and one for the Gaussian smoothing factor sigma. In addition, it has an option to compute pyramid output per resolution, and not all at once, to reduce memory consumption.

The parameters used in this class are:

Parameters:

FixedImagePyramid: Select this pyramid as follows:
(FixedImagePyramid "FixedGenericImagePyramid")

FixedImagePyramidRescaleSchedule: downsampling factors for the fixed image pyramid.
For each dimension, for each resolution level, the downsampling factor of the fixed image can be specified.
Syntax for 2D images:
(FixedImagePyramidRescaleSchedule <reslevel0,dim0> <reslevel0,dim1> <reslevel1,dim0> <reslevel1,dim1> ...)
example: (FixedImagePyramidRescaleSchedule 4 4 2 2 1 1)
Default: isotropic, halved in each resolution, so, like in the example. If ImagePyramidRescaleSchedule is specified, that schedule is used for both fixed and moving image pyramid.

ImagePyramidRescaleSchedule: rescale schedule for both pyramids

ImagePyramidSchedule: same as ImagePyramidRescaleSchedule

FixedImagePyramidSchedule: same as FixedImagePyramidRescaleSchedule

FixedImagePyramidSmoothingSchedule: sigma's for smoothing the fixed image pyramid.
For each dimension, for each resolution level, the sigma of the fixed image can be specified.
Syntax for 2D images:
(FixedImagePyramidSmoothingSchedule <reslevel0,dim0> <reslevel0,dim1> <reslevel1,dim0> <reslevel1,dim1> ...)
example: (FixedImagePyramidSmoothingSchedule 4 4 2 2 1 1)
Default: 0.5 x rescale_factor x fixed_image_spacing.
If ImagePyramidSmoothingSchedule is specified, that schedule is used for both fixed and moving image pyramid.

ImagePyramidSmoothingSchedule: smoothing schedule for both pyramids

ComputePyramidImagesPerResolution: Flag to specify if all resolution levels are computed at once, or per resolution. Latter saves memory.
example: (ComputePyramidImagesPerResolution "true")
Default false.

ImagePyramidUseShrinkImageFilter: Flag to specify if the ShrinkingImageFilter is used for rescaling the image, or the ResampleImageFilter. Skrinker is faster.
example: (ImagePyramidUseShrinkImageFilter "true")
Default false, so by default the resampler is used.

Definition at line 73 of file elxFixedGenericPyramid.h.

+ Inheritance diagram for elastix::FixedGenericPyramid< TElastix >:

Public Types

typedef Superclass2::ConfigurationPointer ConfigurationPointer
 
typedef Superclass2::ConfigurationType ConfigurationType
 
typedef itk::SmartPointer< const SelfConstPointer
 
typedef Superclass2::ElastixPointer ElastixPointer
 
typedef Superclass2::ElastixType ElastixType
 
typedef Superclass1::InputImageConstPointer InputImageConstPointer
 
typedef Superclass1::InputImagePointer InputImagePointer
 
typedef Superclass1::InputImageType InputImageType
 
typedef Superclass2::ITKBaseType ITKBaseType
 
typedef Superclass1::OutputImagePointer OutputImagePointer
 
typedef Superclass1::OutputImageType OutputImageType
 
typedef itk::SmartPointer< SelfPointer
 
typedef Superclass2::RegistrationPointer RegistrationPointer
 
typedef Superclass2::RegistrationType RegistrationType
 
typedef Superclass1::RescaleScheduleType RescaleScheduleType
 
typedef Superclass1::ScheduleType ScheduleType
 
typedef FixedGenericPyramid Self
 
typedef Superclass1::SmoothingScheduleType SmoothingScheduleType
 
typedef itk::GenericMultiResolutionPyramidImageFilter< typename FixedImagePyramidBase< TElastix >::InputImageType, typename FixedImagePyramidBase< TElastix >::OutputImageTypeSuperclass1
 
typedef FixedImagePyramidBase< TElastix > Superclass2
 
- Public Types inherited from itk::GenericMultiResolutionPyramidImageFilter< FixedImagePyramidBase< TElastix >::InputImageType, FixedImagePyramidBase< TElastix >::OutputImageType >
typedef SmartPointer< const SelfConstPointer
 
typedef Superclass::InputImageConstPointer InputImageConstPointer
 
typedef Superclass::InputImagePointer InputImagePointer
 
typedef Superclass::InputImageType InputImageType
 
typedef Superclass::OutputImagePointer OutputImagePointer
 
typedef Superclass::OutputImageType OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef SigmaArrayType RescaleFactorArrayType
 
typedef ScheduleType RescaleScheduleType
 
typedef NumericTraits< PixelType >::ScalarRealType ScalarRealType
 
typedef Superclass::ScheduleType ScheduleType
 
typedef GenericMultiResolutionPyramidImageFilter Self
 
typedef FixedArray< ScalarRealType, itkGetStaticConstMacro(ImageDimension) > SigmaArrayType
 
typedef Array2D< ScalarRealTypeSmoothingScheduleType
 
typedef Superclass::InputImageType::SpacingType SpacingType
 
typedef MultiResolutionPyramidImageFilter< FixedImagePyramidBase< TElastix >::InputImageType, FixedImagePyramidBase< TElastix >::OutputImageTypeSuperclass
 
typedef Superclass::Superclass SuperSuperclass
 
- Public Types inherited from elastix::FixedImagePyramidBase< TElastix >
typedef Superclass::ConfigurationPointer ConfigurationPointer
 
typedef Superclass::ConfigurationType ConfigurationType
 
typedef Superclass::ElastixPointer ElastixPointer
 
typedef Superclass::ElastixType ElastixType
 
typedef ElastixType::FixedImageType InputImageType
 
typedef itk::MultiResolutionPyramidImageFilter< InputImageType, OutputImageTypeITKBaseType
 
typedef ElastixType::FixedImageType OutputImageType
 
typedef Superclass::RegistrationPointer RegistrationPointer
 
typedef Superclass::RegistrationType RegistrationType
 
typedef ITKBaseType::ScheduleType ScheduleType
 
typedef FixedImagePyramidBase Self
 
typedef BaseComponentSE< TElastix > Superclass
 
- Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef Configuration::Pointer ConfigurationPointer
 
typedef Configuration ConfigurationType
 
typedef itk::WeakPointer< ElastixTypeElastixPointer
 
typedef TElastix ElastixType
 
typedef RegistrationTypeRegistrationPointer
 
typedef ElastixType::RegistrationBaseType RegistrationType
 
typedef BaseComponentSE Self
 
typedef BaseComponent Superclass
 

Public Member Functions

void BeforeEachResolution (void) override
 
 elxClassNameMacro ("FixedGenericImagePyramid")
 
virtual const char * GetClassName () const
 
 itkStaticConstMacro (ImageDimension, unsigned int, Superclass1::ImageDimension)
 
void SetFixedSchedule (void) override
 
- Public Member Functions inherited from itk::GenericMultiResolutionPyramidImageFilter< FixedImagePyramidBase< TElastix >::InputImageType, FixedImagePyramidBase< TElastix >::OutputImageType >
virtual void ComputeOnlyForCurrentLevelOff ()
 
virtual void ComputeOnlyForCurrentLevelOn ()
 
virtual const char * GetClassName () const
 
virtual bool GetComputeOnlyForCurrentLevel () const
 
virtual const unsigned intGetCurrentLevel ()
 
const RescaleScheduleTypeGetRescaleSchedule (void) const
 
virtual const SmoothingScheduleTypeGetSmoothingSchedule ()
 
 itkStaticConstMacro (ImageDimension, unsigned int, TInputImage::ImageDimension)
 
 itkStaticConstMacro (OutputImageDimension, unsigned int, TOutputImage::ImageDimension)
 
virtual void SetComputeOnlyForCurrentLevel (const bool _arg)
 
virtual void SetCurrentLevel (unsigned int level)
 
void SetNumberOfLevels (unsigned int num) override
 
virtual void SetRescaleSchedule (const RescaleScheduleType &schedule)
 
virtual void SetRescaleScheduleToUnity (void)
 
void SetSchedule (const ScheduleType &schedule) override
 
virtual void SetSmoothingSchedule (const SmoothingScheduleType &schedule)
 
virtual void SetSmoothingScheduleToZero (void)
 
- Public Member Functions inherited from elastix::FixedImagePyramidBase< TElastix >
void BeforeEachResolutionBase (void) override
 
void BeforeRegistrationBase (void) override
 
virtual ITKBaseTypeGetAsITKBaseType (void)
 
virtual const ITKBaseTypeGetAsITKBaseType (void) const
 
virtual const char * GetClassName () const
 
virtual void SetFixedSchedule (void)
 
virtual void WritePyramidImage (const std::string &filename, const unsigned int &level)
 
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
ConfigurationTypeGetConfiguration (void) const
 
ElastixTypeGetElastix (void) const
 
RegistrationPointer GetRegistration (void) const
 
 ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponentSE)
 
void SetConfiguration (ConfigurationType *_arg)
 
void SetElastix (ElastixType *_arg)
 
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachIteration (void)
 
virtual void AfterEachIterationBase (void)
 
virtual void AfterEachResolution (void)
 
virtual void AfterEachResolutionBase (void)
 
virtual void AfterRegistration (void)
 
virtual void AfterRegistrationBase (void)
 
virtual int BeforeAll (void)
 
virtual int BeforeAllBase (void)
 
virtual void BeforeEachResolution (void)
 
virtual void BeforeEachResolutionBase (void)
 
virtual void BeforeRegistration (void)
 
virtual void BeforeRegistrationBase (void)
 
virtual const char * elxGetClassName (void) const
 
const char * GetComponentLabel (void) const
 
 ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponent)
 
 itkTypeMacroNoParent (BaseComponent)
 
void SetComponentLabel (const char *label, unsigned int idx)
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::GenericMultiResolutionPyramidImageFilter< FixedImagePyramidBase< TElastix >::InputImageType, FixedImagePyramidBase< TElastix >::OutputImageType >
static Pointer New ()
 
- Static Public Member Functions inherited from elastix::BaseComponent
static std::string ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision)
 
static void InitializeElastixExecutable ()
 
static bool IsElastixLibrary ()
 

Protected Member Functions

 FixedGenericPyramid ()
 
 ~FixedGenericPyramid () override
 
- Protected Member Functions inherited from itk::GenericMultiResolutionPyramidImageFilter< FixedImagePyramidBase< TElastix >::InputImageType, FixedImagePyramidBase< TElastix >::OutputImageType >
void GenerateData (void) override
 
void GenerateInputRequestedRegion (void) override
 
void GenerateOutputInformation (void) override
 
void GenerateOutputRequestedRegion (DataObject *output) override
 
 GenericMultiResolutionPyramidImageFilter ()
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
void ReleaseOutputs (void)
 
 ~GenericMultiResolutionPyramidImageFilter () override
 
- Protected Member Functions inherited from elastix::FixedImagePyramidBase< TElastix >
 FixedImagePyramidBase ()
 
 ~FixedImagePyramidBase () override
 
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()=default
 
 ~BaseComponentSE () override=default
 
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()=default
 
virtual ~BaseComponent ()=default
 

Private Member Functions

 FixedGenericPyramid (const Self &)
 
void operator= (const Self &)
 

Additional Inherited Members

- Protected Attributes inherited from itk::GenericMultiResolutionPyramidImageFilter< FixedImagePyramidBase< TElastix >::InputImageType, FixedImagePyramidBase< TElastix >::OutputImageType >
bool m_ComputeOnlyForCurrentLevel
 
unsigned int m_CurrentLevel
 
SmoothingScheduleType m_SmoothingSchedule
 
bool m_SmoothingScheduleDefined
 
- Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer m_Configuration {}
 
ElastixPointer m_Elastix {}
 
RegistrationPointer m_Registration {}
 

Member Typedef Documentation

◆ ConfigurationPointer

template<class TElastix >
typedef Superclass2::ConfigurationPointer elastix::FixedGenericPyramid< TElastix >::ConfigurationPointer

Definition at line 119 of file elxFixedGenericPyramid.h.

◆ ConfigurationType

template<class TElastix >
typedef Superclass2::ConfigurationType elastix::FixedGenericPyramid< TElastix >::ConfigurationType

Definition at line 118 of file elxFixedGenericPyramid.h.

◆ ConstPointer

template<class TElastix >
typedef itk::SmartPointer< const Self > elastix::FixedGenericPyramid< TElastix >::ConstPointer

Definition at line 88 of file elxFixedGenericPyramid.h.

◆ ElastixPointer

template<class TElastix >
typedef Superclass2::ElastixPointer elastix::FixedGenericPyramid< TElastix >::ElastixPointer

Definition at line 117 of file elxFixedGenericPyramid.h.

◆ ElastixType

template<class TElastix >
typedef Superclass2::ElastixType elastix::FixedGenericPyramid< TElastix >::ElastixType

Typedefs inherited from Elastix.

Definition at line 116 of file elxFixedGenericPyramid.h.

◆ InputImageConstPointer

template<class TElastix >
typedef Superclass1::InputImageConstPointer elastix::FixedGenericPyramid< TElastix >::InputImageConstPointer

Definition at line 110 of file elxFixedGenericPyramid.h.

◆ InputImagePointer

template<class TElastix >
typedef Superclass1::InputImagePointer elastix::FixedGenericPyramid< TElastix >::InputImagePointer

Definition at line 108 of file elxFixedGenericPyramid.h.

◆ InputImageType

template<class TElastix >
typedef Superclass1::InputImageType elastix::FixedGenericPyramid< TElastix >::InputImageType

Typedefs inherited from the superclass.

Definition at line 106 of file elxFixedGenericPyramid.h.

◆ ITKBaseType

template<class TElastix >
typedef Superclass2::ITKBaseType elastix::FixedGenericPyramid< TElastix >::ITKBaseType

Definition at line 122 of file elxFixedGenericPyramid.h.

◆ OutputImagePointer

template<class TElastix >
typedef Superclass1::OutputImagePointer elastix::FixedGenericPyramid< TElastix >::OutputImagePointer

Definition at line 109 of file elxFixedGenericPyramid.h.

◆ OutputImageType

template<class TElastix >
typedef Superclass1::OutputImageType elastix::FixedGenericPyramid< TElastix >::OutputImageType

Definition at line 107 of file elxFixedGenericPyramid.h.

◆ Pointer

template<class TElastix >
typedef itk::SmartPointer< Self > elastix::FixedGenericPyramid< TElastix >::Pointer

Definition at line 87 of file elxFixedGenericPyramid.h.

◆ RegistrationPointer

template<class TElastix >
typedef Superclass2::RegistrationPointer elastix::FixedGenericPyramid< TElastix >::RegistrationPointer

Definition at line 121 of file elxFixedGenericPyramid.h.

◆ RegistrationType

template<class TElastix >
typedef Superclass2::RegistrationType elastix::FixedGenericPyramid< TElastix >::RegistrationType

Definition at line 120 of file elxFixedGenericPyramid.h.

◆ RescaleScheduleType

template<class TElastix >
typedef Superclass1::RescaleScheduleType elastix::FixedGenericPyramid< TElastix >::RescaleScheduleType

Definition at line 112 of file elxFixedGenericPyramid.h.

◆ ScheduleType

template<class TElastix >
typedef Superclass1::ScheduleType elastix::FixedGenericPyramid< TElastix >::ScheduleType

Definition at line 111 of file elxFixedGenericPyramid.h.

◆ Self

template<class TElastix >
typedef FixedGenericPyramid elastix::FixedGenericPyramid< TElastix >::Self

Standard ITK-stuff.

Definition at line 82 of file elxFixedGenericPyramid.h.

◆ SmoothingScheduleType

template<class TElastix >
typedef Superclass1::SmoothingScheduleType elastix::FixedGenericPyramid< TElastix >::SmoothingScheduleType

Definition at line 113 of file elxFixedGenericPyramid.h.

◆ Superclass1

template<class TElastix >
typedef itk::GenericMultiResolutionPyramidImageFilter< typename FixedImagePyramidBase< TElastix >::InputImageType, typename FixedImagePyramidBase< TElastix >::OutputImageType > elastix::FixedGenericPyramid< TElastix >::Superclass1

Definition at line 85 of file elxFixedGenericPyramid.h.

◆ Superclass2

template<class TElastix >
typedef FixedImagePyramidBase< TElastix > elastix::FixedGenericPyramid< TElastix >::Superclass2

Definition at line 86 of file elxFixedGenericPyramid.h.

Constructor & Destructor Documentation

◆ FixedGenericPyramid() [1/2]

template<class TElastix >
elastix::FixedGenericPyramid< TElastix >::FixedGenericPyramid ( )
inlineprotected

The constructor.

Definition at line 135 of file elxFixedGenericPyramid.h.

◆ ~FixedGenericPyramid()

template<class TElastix >
elastix::FixedGenericPyramid< TElastix >::~FixedGenericPyramid ( )
inlineoverrideprotected

The destructor.

Definition at line 137 of file elxFixedGenericPyramid.h.

◆ FixedGenericPyramid() [2/2]

template<class TElastix >
elastix::FixedGenericPyramid< TElastix >::FixedGenericPyramid ( const Self )
private

The private constructor.

Member Function Documentation

◆ BeforeEachResolution()

template<class TElastix >
void elastix::FixedGenericPyramid< TElastix >::BeforeEachResolution ( void  )
overridevirtual

Update the current resolution level.

Reimplemented from elastix::BaseComponent.

◆ elxClassNameMacro()

template<class TElastix >
elastix::FixedGenericPyramid< TElastix >::elxClassNameMacro ( "FixedGenericImagePyramid"  )

Name of this class. Use this name in the parameter file to select this specific pyramid.
example: (FixedImagePyramid "FixedGenericImagePyramid")

◆ GetClassName()

template<class TElastix >
virtual const char * elastix::FixedGenericPyramid< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from elastix::FixedImagePyramidBase< TElastix >.

Reimplemented in elastix::OpenCLFixedGenericPyramid< TElastix >.

◆ itkStaticConstMacro()

template<class TElastix >
elastix::FixedGenericPyramid< TElastix >::itkStaticConstMacro ( ImageDimension  ,
unsigned int  ,
Superclass1::ImageDimension   
)

Get the ImageDimension.

◆ New()

template<class TElastix >
static Pointer elastix::FixedGenericPyramid< TElastix >::New ( )
static

Method for creation through the object factory.

◆ operator=()

template<class TElastix >
void elastix::FixedGenericPyramid< TElastix >::operator= ( const Self )
private

The private copy constructor.

◆ SetFixedSchedule()

template<class TElastix >
void elastix::FixedGenericPyramid< TElastix >::SetFixedSchedule ( void  )
overridevirtual

Method for setting the schedule. Override from FixedImagePyramidBase, since we now have two schedules, rescaling and smoothing.

Reimplemented from elastix::FixedImagePyramidBase< TElastix >.



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