elastix::ElastixMain Class Reference

#include <elxElastixMain.h>

Detailed Description

A class with all functionality to configure elastix.

The ElastixMain initializes the MyConfiguration class with the parameters and commandline arguments. After this, the class loads and creates all components and sets them in ElastixTemplate.

Parameters:

FixedImageDimension: the dimension of the fixed image.
example: (FixedImageDimension 2)

MovingImageDimension: the dimension of the fixed image.
example: (MovingImageDimension 2)

FixedInternalImagePixelType: the pixel type of the internal fixed image representation. The fixed image is automatically converted to this type.
example: (FixedInternalImagePixelType "float")
Default/recommended: "float"

MovingInternalImagePixelType: the pixel type of the internal moving image representation. The moving image is automatically converted to this type.
example: (MovingInternalImagePixelType "float")
Default/recommended: "float"

Transform Parameters:

FixedImageDimension: the dimension of the fixed image.
example: (FixedImageDimension 2)

MovingImageDimension: the dimension of the fixed image.
example: (MovingImageDimension 2)

FixedInternalImagePixelType: the pixel type of the internal fixed image representation. The fixed image is automatically converted to this type.
example: (FixedInternalImagePixelType "float")
Default/recommended: "float"

MovingInternalImagePixelType: the pixel type of the internal moving image representation. The moving image is automatically converted to this type.
example: (MovingInternalImagePixelType "float")
Default/recommended: "float"

Definition at line 94 of file elxElastixMain.h.

Inheritance diagram for elastix::ElastixMain:

Public Types
typedef ConfigurationType::CommandLineArgumentMapType	ArgumentMapType
typedef ComponentDatabaseType::Pointer	ComponentDatabasePointer
typedef ComponentDatabase	ComponentDatabaseType
typedef ComponentDatabaseType::ComponentDescriptionType	ComponentDescriptionType
typedef ComponentLoaderType::Pointer	ComponentLoaderPointer
typedef ComponentLoader	ComponentLoaderType
typedef ConfigurationType::Pointer	ConfigurationPointer
typedef ElastixBase::ConfigurationType	ConfigurationType
typedef itk::SmartPointer< const Self >	ConstPointer
typedef ElastixBase::DataObjectContainerPointer	DataObjectContainerPointer
typedef ElastixBase::DataObjectContainerType	DataObjectContainerType
typedef DataObjectType::Pointer	DataObjectPointer
typedef itk::DataObject	DataObjectType
typedef ComponentDatabaseType::IndexType	DBIndexType
typedef ElastixBase	ElastixBaseType
typedef ElastixBase::FlatDirectionCosinesType	FlatDirectionCosinesType
typedef ComponentDatabaseType::ImageDimensionType	ImageDimensionType
typedef ElastixBase::ObjectContainerPointer	ObjectContainerPointer
typedef ElastixBase::ObjectContainerType	ObjectContainerType
typedef ObjectType::Pointer	ObjectPointer
typedef itk::Object	ObjectType
typedef itk::ParameterMapInterface::ParameterMapType	ParameterMapType
typedef ComponentDatabaseType::PixelTypeDescriptionType	PixelTypeDescriptionType
typedef itk::SmartPointer< Self >	Pointer
typedef ComponentDatabaseType::PtrToCreator	PtrToCreator
typedef ElastixMain	Self
typedef itk::Object	Superclass

Public Member Functions
virtual void	EnterCommandLineArguments (const ArgumentMapType &argmap)
virtual void	EnterCommandLineArguments (const ArgumentMapType &argmap, const ParameterMapType &inputMap)
virtual void	EnterCommandLineArguments (const ArgumentMapType &argmap, const std::vector< ParameterMapType > &inputMaps)
virtual const char *	GetClassName () const
virtual DBIndexType	GetDBIndex () const
virtual ElastixBaseType *	GetElastixBase (void) const
unsigned int	GetElastixLevel (void)
virtual ImageDimensionType	GetFixedImageDimension ()
virtual PixelTypeDescriptionType	GetFixedImagePixelType ()
virtual ImageDimensionType	GetMovingImageDimension ()
virtual PixelTypeDescriptionType	GetMovingImagePixelType ()
virtual const FlatDirectionCosinesType &	GetOriginalFixedImageDirectionFlat (void) const
unsigned int	GetTotalNumberOfElastixLevels (void)
virtual ParameterMapType	GetTransformParametersMap (void) const
	itkGetModifiableObjectMacro (Configuration, ConfigurationType)
	itkGetModifiableObjectMacro (Elastix, ObjectType)
	itkGetModifiableObjectMacro (FinalTransform, ObjectType)
	itkGetModifiableObjectMacro (FixedImageContainer, DataObjectContainerType)
	itkGetModifiableObjectMacro (FixedMaskContainer, DataObjectContainerType)
	itkGetModifiableObjectMacro (InitialTransform, ObjectType)
	itkGetModifiableObjectMacro (MovingImageContainer, DataObjectContainerType)
	itkGetModifiableObjectMacro (MovingMaskContainer, DataObjectContainerType)
	itkGetModifiableObjectMacro (ResultDeformationFieldContainer, DataObjectContainerType)
	itkGetModifiableObjectMacro (ResultImageContainer, DataObjectContainerType)
virtual int	Run (const ArgumentMapType &argmap)
virtual int	Run (const ArgumentMapType &argmap, const ParameterMapType &inputMap)
virtual int	Run (void)
virtual void	SetConfiguration (ConfigurationType *_arg)
void	SetElastixLevel (unsigned int level)
virtual void	SetFixedImageContainer (DataObjectContainerType *_arg)
virtual void	SetFixedImageDimension (ImageDimensionType _arg)
virtual void	SetFixedImagePixelType (PixelTypeDescriptionType _arg)
virtual void	SetFixedMaskContainer (DataObjectContainerType *_arg)
virtual void	SetInitialTransform (ObjectType *_arg)
virtual void	SetMaximumNumberOfThreads (void) const
virtual void	SetMovingImageContainer (DataObjectContainerType *_arg)
virtual void	SetMovingImageDimension (ImageDimensionType _arg)
virtual void	SetMovingImagePixelType (PixelTypeDescriptionType _arg)
virtual void	SetMovingMaskContainer (DataObjectContainerType *_arg)
virtual void	SetOriginalFixedImageDirectionFlat (const FlatDirectionCosinesType &arg)
virtual void	SetProcessPriority (void) const
virtual void	SetResultDeformationFieldContainer (DataObjectContainerType *_arg)
virtual void	SetResultImageContainer (DataObjectContainerType *_arg)
void	SetTotalNumberOfElastixLevels (unsigned int levels)

Static Public Member Functions
static ComponentDatabase *	GetComponentDatabase (void)
static Pointer	New ()
static void	SetComponentDatabase (ComponentDatabase *arg)
static void	UnloadComponents (void)

Protected Member Functions
virtual ObjectPointer	CreateComponent (const ComponentDescriptionType &name)
virtual ObjectContainerPointer	CreateComponents (const ComponentDescriptionType &key, const ComponentDescriptionType &defaultComponentName, int &errorcode, bool mandatoryComponent=true)
	ElastixMain ()
void	GetImageInformationFromFile (const std::string &filename, ImageDimensionType &imageDimension) const
virtual int	InitDBIndex (void)
virtual int	LoadComponents (void)
	~ElastixMain () override

Protected Attributes
ConfigurationPointer	m_Configuration
std::vector< ConfigurationPointer >	m_Configurations
DBIndexType	m_DBIndex
ObjectPointer	m_Elastix
ObjectPointer	m_FinalTransform
DataObjectContainerPointer	m_FixedImageContainer
ImageDimensionType	m_FixedImageDimension
PixelTypeDescriptionType	m_FixedImagePixelType
DataObjectContainerPointer	m_FixedMaskContainer
ObjectPointer	m_InitialTransform
DataObjectContainerPointer	m_MovingImageContainer
ImageDimensionType	m_MovingImageDimension
PixelTypeDescriptionType	m_MovingImagePixelType
DataObjectContainerPointer	m_MovingMaskContainer
FlatDirectionCosinesType	m_OriginalFixedImageDirection
DataObjectContainerPointer	m_ResultDeformationFieldContainer
DataObjectContainerPointer	m_ResultImageContainer
ParameterMapType	m_TransformParametersMap

Static Protected Attributes
static ComponentDatabasePointer	s_CDB
static ComponentLoaderPointer	s_ComponentLoader

Private Member Functions
	ElastixMain (const Self &)
void	operator= (const Self &)

Member Typedef Documentation

ArgumentMapType

typedef ConfigurationType::CommandLineArgumentMapType elastix::ElastixMain::ArgumentMapType

Definition at line 121 of file elxElastixMain.h.

ComponentDatabasePointer

typedef ComponentDatabaseType::Pointer elastix::ElastixMain::ComponentDatabasePointer

Definition at line 133 of file elxElastixMain.h.

ComponentDatabaseType

typedef ComponentDatabase elastix::ElastixMain::ComponentDatabaseType

Typedefs for the database that holds pointers to New() functions. Those functions are used to instantiate components, such as the metric etc.

Definition at line 132 of file elxElastixMain.h.

ComponentDescriptionType

typedef ComponentDatabaseType::ComponentDescriptionType elastix::ElastixMain::ComponentDescriptionType

Definition at line 135 of file elxElastixMain.h.

ComponentLoaderPointer

typedef ComponentLoaderType::Pointer elastix::ElastixMain::ComponentLoaderPointer

Definition at line 142 of file elxElastixMain.h.

ComponentLoaderType

typedef ComponentLoader elastix::ElastixMain::ComponentLoaderType

Typedef for class that populates a ComponentDatabase.

Definition at line 141 of file elxElastixMain.h.

ConfigurationPointer

typedef ConfigurationType::Pointer elastix::ElastixMain::ConfigurationPointer

Definition at line 122 of file elxElastixMain.h.

ConfigurationType

typedef ElastixBase::ConfigurationType elastix::ElastixMain::ConfigurationType

Definition at line 120 of file elxElastixMain.h.

ConstPointer

typedef itk::SmartPointer< const Self > elastix::ElastixMain::ConstPointer

Definition at line 102 of file elxElastixMain.h.

DataObjectContainerPointer

typedef ElastixBase::DataObjectContainerPointer elastix::ElastixMain::DataObjectContainerPointer

Definition at line 126 of file elxElastixMain.h.

DataObjectContainerType

typedef ElastixBase::DataObjectContainerType elastix::ElastixMain::DataObjectContainerType

Definition at line 124 of file elxElastixMain.h.

DataObjectPointer

typedef DataObjectType::Pointer elastix::ElastixMain::DataObjectPointer

Definition at line 116 of file elxElastixMain.h.

DataObjectType

typedef itk::DataObject elastix::ElastixMain::DataObjectType

Definition at line 115 of file elxElastixMain.h.

DBIndexType

typedef ComponentDatabaseType::IndexType elastix::ElastixMain::DBIndexType

Definition at line 138 of file elxElastixMain.h.

ElastixBaseType

typedef ElastixBase elastix::ElastixMain::ElastixBaseType

elastix components.

Definition at line 119 of file elxElastixMain.h.

FlatDirectionCosinesType

typedef ElastixBase::FlatDirectionCosinesType elastix::ElastixMain::FlatDirectionCosinesType

Definition at line 127 of file elxElastixMain.h.

ImageDimensionType

typedef ComponentDatabaseType::ImageDimensionType elastix::ElastixMain::ImageDimensionType

Definition at line 137 of file elxElastixMain.h.

ObjectContainerPointer

typedef ElastixBase::ObjectContainerPointer elastix::ElastixMain::ObjectContainerPointer

Definition at line 125 of file elxElastixMain.h.

ObjectContainerType

typedef ElastixBase::ObjectContainerType elastix::ElastixMain::ObjectContainerType

Definition at line 123 of file elxElastixMain.h.

ObjectPointer

typedef ObjectType::Pointer elastix::ElastixMain::ObjectPointer

Definition at line 114 of file elxElastixMain.h.

ObjectType

typedef itk::Object elastix::ElastixMain::ObjectType

Typedef's. ITK base objects.

Definition at line 113 of file elxElastixMain.h.

ParameterMapType

typedef itk::ParameterMapInterface::ParameterMapType elastix::ElastixMain::ParameterMapType

Typedef that is used in the elastix dll version.

Definition at line 145 of file elxElastixMain.h.

PixelTypeDescriptionType

typedef ComponentDatabaseType::PixelTypeDescriptionType elastix::ElastixMain::PixelTypeDescriptionType

Definition at line 136 of file elxElastixMain.h.

Pointer

typedef itk::SmartPointer< Self > elastix::ElastixMain::Pointer

Definition at line 101 of file elxElastixMain.h.

PtrToCreator

typedef ComponentDatabaseType::PtrToCreator elastix::ElastixMain::PtrToCreator

Definition at line 134 of file elxElastixMain.h.

Self

typedef ElastixMain elastix::ElastixMain::Self

Standard itk.

Definition at line 99 of file elxElastixMain.h.

Superclass

typedef itk::Object elastix::ElastixMain::Superclass

Definition at line 100 of file elxElastixMain.h.

Constructor & Destructor Documentation

ElastixMain() [1/2]

elastix::ElastixMain::ElastixMain ( )

protected

~ElastixMain()

elastix::ElastixMain::~ElastixMain ( )

overrideprotected

ElastixMain() [2/2]

elastix::ElastixMain::ElastixMain ( const Self &  )

private

Member Function Documentation

CreateComponent()

virtual ObjectPointer elastix::ElastixMain::CreateComponent ( const ComponentDescriptionType &  name )

protectedvirtual

Create a component. Make sure InitDBIndex has been called before. The input is a string, e.g. "MattesMutualInformation".

CreateComponents()

virtual ObjectContainerPointer elastix::ElastixMain::CreateComponents ( const ComponentDescriptionType &  key, const ComponentDescriptionType &  defaultComponentName, int &  errorcode, bool  mandatoryComponent = true  )

protectedvirtual

Create components. Reads from the configuration object (using the provided key) the names of the components to create and store their instantiations in the provided ObjectContainer. The errorcode remains what it was if no error occurred. Otherwise it's set to 1. The 'key' is the entry inspected in the parameter file A component named 'defaultComponentName' is used when the key is not found in the parameter file. If "" is used, no default is assumed, and an error is given when the component was not specified. If the flag mandatoryComponent is set to false, no error is given, because the component may not be needed anyway.

NB: this function should never be called with: ( !mandatoryComponent && defaultComponentName != "" ) == true

EnterCommandLineArguments() [1/3]

virtual void elastix::ElastixMain::EnterCommandLineArguments ( const ArgumentMapType &  argmap )

virtual

Enter the command line parameters, which were given by the user, if elastix.exe is used to do a registration. The Configuration object will be initialized in this way.

EnterCommandLineArguments() [2/3]

virtual void elastix::ElastixMain::EnterCommandLineArguments ( const ArgumentMapType &  argmap, const ParameterMapType &  inputMap  )

virtual

EnterCommandLineArguments() [3/3]

virtual void elastix::ElastixMain::EnterCommandLineArguments ( const ArgumentMapType &  argmap, const std::vector< ParameterMapType > &  inputMaps  )

virtual

GetClassName()

virtual const char * elastix::ElastixMain::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented in elastix::TransformixMain.

GetComponentDatabase()

static ComponentDatabase * elastix::ElastixMain::GetComponentDatabase ( void  )

inlinestatic

Functions to get/set the ComponentDatabase.

Definition at line 275 of file elxElastixMain.h.

GetDBIndex()

virtual DBIndexType elastix::ElastixMain::GetDBIndex ( ) const

virtual

Returns the Index that is used in elx::ComponentDatabase.

GetElastixBase()

virtual ElastixBaseType * elastix::ElastixMain::GetElastixBase ( void  ) const

virtual

Convenience function that returns the elastix component as a pointer to an ElastixBaseType. Use only after having called run()!

GetElastixLevel()

unsigned int elastix::ElastixMain::GetElastixLevel

(

void

)

GetFixedImageDimension()

virtual ImageDimensionType elastix::ElastixMain::GetFixedImageDimension ( )

virtual

GetFixedImagePixelType()

virtual PixelTypeDescriptionType elastix::ElastixMain::GetFixedImagePixelType ( )

virtual

GetImageInformationFromFile()

void elastix::ElastixMain::GetImageInformationFromFile ( const std::string &  filename, ImageDimensionType &  imageDimension  ) const

protected

Helper function to obtain information from images on disk.

GetMovingImageDimension()

virtual ImageDimensionType elastix::ElastixMain::GetMovingImageDimension ( )

virtual

GetMovingImagePixelType()

virtual PixelTypeDescriptionType elastix::ElastixMain::GetMovingImagePixelType ( )

virtual

GetOriginalFixedImageDirectionFlat()

virtual const FlatDirectionCosinesType & elastix::ElastixMain::GetOriginalFixedImageDirectionFlat ( void  ) const

virtual

GetTotalNumberOfElastixLevels()

unsigned int elastix::ElastixMain::GetTotalNumberOfElastixLevels

(

void

)

GetTransformParametersMap()

virtual ParameterMapType elastix::ElastixMain::GetTransformParametersMap ( void  ) const

virtual

GetTransformParametersMap

InitDBIndex()

virtual int elastix::ElastixMain::InitDBIndex ( void  )

protectedvirtual

InitDBIndex sets m_DBIndex by asking the ImageTypes from the Configuration object and obtaining the corresponding DB index from the ComponentDatabase.

Reimplemented in elastix::TransformixMain.

itkGetModifiableObjectMacro() [1/10]

elastix::ElastixMain::itkGetModifiableObjectMacro	(	Configuration	,
		ConfigurationType
	)

itkGetModifiableObjectMacro() [2/10]

elastix::ElastixMain::itkGetModifiableObjectMacro	(	Elastix	,
		ObjectType
	)

Functions to get pointers to the elastix components. The components are returned as Object::Pointer. Before calling this functions, call run().

itkGetModifiableObjectMacro() [3/10]

elastix::ElastixMain::itkGetModifiableObjectMacro	(	FinalTransform	,
		ObjectType
	)

Get the final transform (the result of running elastix). You may pass this as an InitialTransform in an other instantiation of ElastixMain. Only valid after calling Run()!

itkGetModifiableObjectMacro() [4/10]

elastix::ElastixMain::itkGetModifiableObjectMacro	(	FixedImageContainer	,
		DataObjectContainerType
	)

itkGetModifiableObjectMacro() [5/10]

elastix::ElastixMain::itkGetModifiableObjectMacro	(	FixedMaskContainer	,
		DataObjectContainerType
	)

itkGetModifiableObjectMacro() [6/10]

elastix::ElastixMain::itkGetModifiableObjectMacro	(	InitialTransform	,
		ObjectType
	)

itkGetModifiableObjectMacro() [7/10]

elastix::ElastixMain::itkGetModifiableObjectMacro	(	MovingImageContainer	,
		DataObjectContainerType
	)

itkGetModifiableObjectMacro() [8/10]

elastix::ElastixMain::itkGetModifiableObjectMacro	(	MovingMaskContainer	,
		DataObjectContainerType
	)

itkGetModifiableObjectMacro() [9/10]

elastix::ElastixMain::itkGetModifiableObjectMacro	(	ResultDeformationFieldContainer	,
		DataObjectContainerType
	)

itkGetModifiableObjectMacro() [10/10]

elastix::ElastixMain::itkGetModifiableObjectMacro	(	ResultImageContainer	,
		DataObjectContainerType
	)

LoadComponents()

virtual int elastix::ElastixMain::LoadComponents ( void  )

protectedvirtual

New()

static Pointer elastix::ElastixMain::New ( )

static

Method for creation through the object factory.

operator=()

void elastix::ElastixMain::operator= ( const Self &  )

private

Run() [1/3]

virtual int elastix::ElastixMain::Run ( const ArgumentMapType &  argmap )

virtual

Start the registration this version of 'run' first calls this->EnterCommandLineParameters(argc,argv) and then calls run().

Reimplemented in elastix::TransformixMain.

Run() [2/3]

virtual int elastix::ElastixMain::Run ( const ArgumentMapType &  argmap, const ParameterMapType &  inputMap  )

virtual

Reimplemented in elastix::TransformixMain.

Run() [3/3]

virtual int elastix::ElastixMain::Run ( void  )

virtual

Start the registration run() without command line parameters; it assumes that EnterCommandLineParameters has been invoked already, or that m_Configuration is initialized in a different way.

Reimplemented in elastix::TransformixMain.

SetComponentDatabase()

static void elastix::ElastixMain::SetComponentDatabase ( ComponentDatabase *  arg )

inlinestatic

Definition at line 281 of file elxElastixMain.h.

SetConfiguration()

virtual void elastix::ElastixMain::SetConfiguration ( ConfigurationType *  _arg )

virtual

Set/Get the configuration object.

SetElastixLevel()

void elastix::ElastixMain::SetElastixLevel

(

unsigned int

level

)

Get and Set the elastix level.

SetFixedImageContainer()

virtual void elastix::ElastixMain::SetFixedImageContainer ( DataObjectContainerType *  _arg )

virtual

Set/Get functions for the fixed and moving images (if these are not used, elastix tries to read them from disk, according to the command line parameters).

SetFixedImageDimension()

virtual void elastix::ElastixMain::SetFixedImageDimension ( ImageDimensionType  _arg )

virtual

SetFixedImagePixelType()

virtual void elastix::ElastixMain::SetFixedImagePixelType ( PixelTypeDescriptionType  _arg )

virtual

Set/Get functions for the description of the image type.

SetFixedMaskContainer()

virtual void elastix::ElastixMain::SetFixedMaskContainer ( DataObjectContainerType *  _arg )

virtual

Set/Get functions for the fixed and moving masks (if these are not used, elastix tries to read them from disk, according to the command line parameters).

SetInitialTransform()

virtual void elastix::ElastixMain::SetInitialTransform ( ObjectType *  _arg )

virtual

Set/Get the initial transform the type is ObjectType, but the pointer should actually point to an itk::Transform type (or inherited from that one).

SetMaximumNumberOfThreads()

virtual void elastix::ElastixMain::SetMaximumNumberOfThreads ( void  ) const

virtual

Set maximum number of threads, which is read from the command line arguments. Syntax: -threads <int>

SetMovingImageContainer()

virtual void elastix::ElastixMain::SetMovingImageContainer ( DataObjectContainerType *  _arg )

virtual

SetMovingImageDimension()

virtual void elastix::ElastixMain::SetMovingImageDimension ( ImageDimensionType  _arg )

virtual

SetMovingImagePixelType()

virtual void elastix::ElastixMain::SetMovingImagePixelType ( PixelTypeDescriptionType  _arg )

virtual

SetMovingMaskContainer()

virtual void elastix::ElastixMain::SetMovingMaskContainer ( DataObjectContainerType *  _arg )

virtual

SetOriginalFixedImageDirectionFlat()

virtual void elastix::ElastixMain::SetOriginalFixedImageDirectionFlat ( const FlatDirectionCosinesType &  arg )

virtual

Set/Get the original fixed image direction as a flat array (d11 d21 d31 d21 d22 etc )

SetProcessPriority()

virtual void elastix::ElastixMain::SetProcessPriority ( void  ) const

virtual

Set process priority, which is read from the command line arguments. Syntax: -priority <high, belownormal>

SetResultDeformationFieldContainer()

virtual void elastix::ElastixMain::SetResultDeformationFieldContainer ( DataObjectContainerType *  _arg )

virtual

SetResultImageContainer()

virtual void elastix::ElastixMain::SetResultImageContainer ( DataObjectContainerType *  _arg )

virtual

Set/Get functions for the result images (if these are not used, elastix tries to read them from disk, according to the command line parameters).

SetTotalNumberOfElastixLevels()

void elastix::ElastixMain::SetTotalNumberOfElastixLevels

(

unsigned int

levels

)

Get and Set the total number of elastix levels.

UnloadComponents()

static void elastix::ElastixMain::UnloadComponents ( void  )

static

Field Documentation

m_Configuration

ConfigurationPointer elastix::ElastixMain::m_Configuration

protected

The configuration object, containing the parameters and command-line arguments.

Definition at line 306 of file elxElastixMain.h.

m_Configurations

std::vector< ConfigurationPointer > elastix::ElastixMain::m_Configurations

protected

A vector of configuration objects, needed when transformix is used as library.

Definition at line 309 of file elxElastixMain.h.

m_DBIndex

DBIndexType elastix::ElastixMain::m_DBIndex

protected

Definition at line 317 of file elxElastixMain.h.

m_Elastix

ObjectPointer elastix::ElastixMain::m_Elastix

protected

A pointer to elastix as an itk::object. In run() this pointer will be assigned to an ElastixTemplate<>.

Definition at line 303 of file elxElastixMain.h.

m_FinalTransform

ObjectPointer elastix::ElastixMain::m_FinalTransform

protected

A transform that is the result of registration.

Definition at line 328 of file elxElastixMain.h.

m_FixedImageContainer

DataObjectContainerPointer elastix::ElastixMain::m_FixedImageContainer

protected

The images and masks.

Definition at line 320 of file elxElastixMain.h.

m_FixedImageDimension

ImageDimensionType elastix::ElastixMain::m_FixedImageDimension

protected

Definition at line 313 of file elxElastixMain.h.

m_FixedImagePixelType

PixelTypeDescriptionType elastix::ElastixMain::m_FixedImagePixelType

protected

Description of the ImageTypes.

Definition at line 312 of file elxElastixMain.h.

m_FixedMaskContainer

DataObjectContainerPointer elastix::ElastixMain::m_FixedMaskContainer

protected

Definition at line 322 of file elxElastixMain.h.

m_InitialTransform

ObjectPointer elastix::ElastixMain::m_InitialTransform

protected

The initial transform.

Definition at line 331 of file elxElastixMain.h.

m_MovingImageContainer

DataObjectContainerPointer elastix::ElastixMain::m_MovingImageContainer

protected

Definition at line 321 of file elxElastixMain.h.

m_MovingImageDimension

ImageDimensionType elastix::ElastixMain::m_MovingImageDimension

protected

Definition at line 315 of file elxElastixMain.h.

m_MovingImagePixelType

PixelTypeDescriptionType elastix::ElastixMain::m_MovingImagePixelType

protected

Definition at line 314 of file elxElastixMain.h.

m_MovingMaskContainer

DataObjectContainerPointer elastix::ElastixMain::m_MovingMaskContainer

protected

Definition at line 323 of file elxElastixMain.h.

m_OriginalFixedImageDirection

FlatDirectionCosinesType elastix::ElastixMain::m_OriginalFixedImageDirection

protected

Definition at line 337 of file elxElastixMain.h.

m_ResultDeformationFieldContainer

DataObjectContainerPointer elastix::ElastixMain::m_ResultDeformationFieldContainer

protected

Definition at line 325 of file elxElastixMain.h.

m_ResultImageContainer

DataObjectContainerPointer elastix::ElastixMain::m_ResultImageContainer

protected

Definition at line 324 of file elxElastixMain.h.

m_TransformParametersMap

ParameterMapType elastix::ElastixMain::m_TransformParametersMap

protected

Transformation parameters map containing parameters that is the result of registration.

Definition at line 335 of file elxElastixMain.h.

s_CDB

ComponentDatabasePointer elastix::ElastixMain::s_CDB

staticprotected

Definition at line 339 of file elxElastixMain.h.

s_ComponentLoader

ComponentLoaderPointer elastix::ElastixMain::s_ComponentLoader

staticprotected

Definition at line 340 of file elxElastixMain.h.