#include <elxDeformationFieldTransform.h>

Detailed Description

template<class TElastix>
class elastix::DeformationFieldTransform< TElastix >

A transform based on a DeformationField.

This transform models the transformation by a deformation vector field. This transform is NOT meant to be used for optimisation. Just use it as an initial transform, or with transformix.

The parameters used in this class are:

Parameters:: Transform: Select this transform as follows:
(Transform "DeformationFieldTransform")

The transform parameters necessary for transformix, additionally defined by this class, are:

Transform Parameters:

DeformationFieldFileName: stores the name of the deformation field.
example: (DeformationFieldFileName "defField.mhd")

DeformationFieldInterpolationOrder: The interpolation order used for interpolating the deformation field:
example: (DeformationFieldInterpolationOrder 0)
The default value is 0. Choose from the allowed values 0 or 1.

See also: DeformationFieldInterpolatingTransform

Definition at line 54 of file elxDeformationFieldTransform.h.

Inheritance diagram for elastix::DeformationFieldTransform< TElastix >:

Public Types
using	CombinationTransformType = typename Superclass2::CombinationTransformType

using	ConstPointer = itk::SmartPointer< const Self >

using	CoordRepType = ElastixBase::CoordRepType

using	DeformationFieldInterpolatingTransformPointer = typename DeformationFieldInterpolatingTransformType::Pointer

using	DeformationFieldInterpolatingTransformType = itk::DeformationFieldInterpolatingTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension, float >

using	DeformationFieldType = typename DeformationFieldInterpolatingTransformType::DeformationFieldType

using	DeformationFieldVectorType = typename DeformationFieldInterpolatingTransformType::DeformationFieldVectorType

using	FixedImageType = typename TElastix::FixedImageType

using	ITKBaseType = typename Superclass2::ITKBaseType

using	MovingImageType = typename TElastix::MovingImageType

using	ParameterMapType = typename TElastix::ParameterMapType

using	Pointer = itk::SmartPointer< Self >

using	Self = DeformationFieldTransform

using	Superclass1 = itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >

using	Superclass2 = elx::TransformBase< TElastix >

Public Types inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
using	ConstPointer = SmartPointer< const Self >

using	CurrentTransformConstPointer = typename CurrentTransformType::ConstPointer

using	CurrentTransformInverseTransformBasePointer = typename CurrentTransformType::InverseTransformBasePointer

using	CurrentTransformInverseTransformBaseType = typename CurrentTransformType::InverseTransformBaseType

using	CurrentTransformPointer = typename CurrentTransformType::Pointer

using	CurrentTransformType = Superclass

using	InitialTransformConstPointer = typename InitialTransformType::ConstPointer

using	InitialTransformInverseTransformBasePointer = typename InitialTransformType::InverseTransformBasePointer

using	InitialTransformInverseTransformBaseType = typename InitialTransformType::InverseTransformBaseType

using	InitialTransformPointer = typename InitialTransformType::Pointer

using	InitialTransformType = Superclass

using	InverseTransformBaseType = typename Superclass::InverseTransformBaseType

using	Pointer = SmartPointer< Self >

using	Self = AdvancedCombinationTransform

using	Superclass = AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >

using	TransformType = typename Superclass::TransformType

using	TransformTypeConstPointer = typename TransformType::ConstPointer

using	TransformTypePointer = typename TransformType::Pointer

Public Types inherited from itk::AdvancedTransform< TScalarType, NInputDimensions, NOutputDimensions >
using	ConstPointer = SmartPointer< const Self >

using	InternalMatrixType = typename SpatialJacobianType::InternalMatrixType

using	InverseTransformBaseType = typename Superclass::InverseTransformBaseType

using	JacobianOfSpatialHessianType = std::vector< SpatialHessianType >

using	JacobianOfSpatialJacobianType = std::vector< SpatialJacobianType >

using	MovingImageGradientType = OutputCovariantVectorType

using	MovingImageGradientValueType = typename MovingImageGradientType::ValueType

using	NonZeroJacobianIndicesType = std::vector< unsigned long >

using	Pointer = SmartPointer< Self >

using	Self = AdvancedTransform

using	SpatialHessianType = FixedArray< Matrix< ScalarType, InputSpaceDimension, InputSpaceDimension >, OutputSpaceDimension >

using	SpatialJacobianType = Matrix< ScalarType, OutputSpaceDimension, InputSpaceDimension >

using	Superclass = Transform< TScalarType, NInputDimensions, NOutputDimensions >

using	TransformType = Transform< TScalarType, NInputDimensions, NOutputDimensions >

using	TransformTypeConstPointer = typename TransformType::ConstPointer

using	TransformTypePointer = typename TransformType::Pointer

Public Types inherited from elastix::TransformBase< TElastix >
using	CombinationTransformType = itk::AdvancedCombinationTransform< CoordRepType, Self::FixedImageDimension >

using	CommandLineArgumentMapType = Configuration ::CommandLineArgumentMapType

using	CommandLineEntryType = Configuration ::CommandLineEntryType

using	ComponentDescriptionType = ComponentDatabase::ComponentDescriptionType

using	CoordRepType = ElastixBase::CoordRepType

using	DeformationFieldImageType = itk::Image< VectorPixelType, FixedImageDimension >

using	FixedImageType = typename TElastix::FixedImageType

using	InitialTransformType = typename CombinationTransformType::InitialTransformType

using	InputPointType = typename ITKBaseType::InputPointType

using	ITKBaseType = CombinationTransformType

using	ITKRegistrationType = typename RegistrationType::ITKBaseType

using	MovingImageType = typename TElastix::MovingImageType

using	OptimizerType = typename ITKRegistrationType::OptimizerType

using	OutputPointType = typename ITKBaseType::OutputPointType

using	ParameterMapType = typename TElastix::ParameterMapType

using	ParametersType = itk::OptimizerParameters< ValueType >

using	PtrToCreator = ComponentDatabase::PtrToCreator

using	RegistrationType = typename ElastixType::RegistrationBaseType

using	ScalesType = itk::Optimizer::ScalesType

using	Self = TransformBase

using	SpatialJacobianDeterminantImageType = itk::Image< float, FixedImageDimension >

using	SpatialJacobianMatrixImageType = itk::Image< itk::Matrix< float, MovingImageDimension, FixedImageDimension >, FixedImageDimension >

using	Superclass = BaseComponentSE< TElastix >

using	ValueType = double

using	VectorPixelType = itk::Vector< float, FixedImageDimension >

Public Types inherited from elastix::BaseComponentSE< TElastix >
using	ElastixType = TElastix

using	RegistrationType = typename ElastixType::RegistrationBaseType

using	Self = BaseComponentSE

using	Superclass = BaseComponent

Public Member Functions
	elxClassNameMacro ("DeformationFieldTransform")

virtual const char *	GetClassName () const

	ITK_DISALLOW_COPY_AND_MOVE (DeformationFieldTransform)

	itkStaticConstMacro (SpaceDimension, unsigned int, Superclass2::FixedImageDimension)

void	ReadFromFile () override

Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
void	EvaluateJacobianWithImageGradientProduct (const InputPointType &inputPoint, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

const FixedParametersType &	GetFixedParameters () const override

bool	GetHasNonZeroSpatialHessian () const override

bool	GetInverse (Self *inverse) const

void	GetJacobian (const InputPointType &inputPoint, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

void	GetJacobianOfSpatialHessian (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

void	GetJacobianOfSpatialHessian (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

void	GetJacobianOfSpatialJacobian (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

void	GetJacobianOfSpatialJacobian (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

const TransformTypePointer	GetNthTransform (SizeValueType n) const

NumberOfParametersType	GetNumberOfNonZeroJacobianIndices () const override

NumberOfParametersType	GetNumberOfParameters () const override

SizeValueType	GetNumberOfTransforms () const

const ParametersType &	GetParameters () const override

void	GetSpatialHessian (const InputPointType &inputPoint, SpatialHessianType &sh) const override

void	GetSpatialJacobian (const InputPointType &inputPoint, SpatialJacobianType &sj) const override

TransformCategoryEnum	GetTransformCategory () const override

virtual bool	GetUseAddition () const

virtual bool	GetUseComposition () const

bool	HasNonZeroJacobianOfSpatialHessian () const

bool	IsLinear () const override

	ITK_DISALLOW_COPY_AND_MOVE (AdvancedCombinationTransform)

	itkGetModifiableObjectMacro (CurrentTransform, CurrentTransformType)

	itkGetModifiableObjectMacro (InitialTransform, InitialTransformType)

	itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)

void	SetCurrentTransform (CurrentTransformType *_arg)

void	SetFixedParameters (const FixedParametersType &fixedParam) override

void	SetInitialTransform (InitialTransformType *_arg)

void	SetParameters (const ParametersType &param) override

void	SetParametersByValue (const ParametersType &param) override

void	SetUseAddition (bool _arg)

void	SetUseComposition (bool _arg)

OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &) const override

OutputPointType	TransformPoint (const InputPointType &point) const override

OutputVectorType	TransformVector (const InputVectorType &) const override

OutputVnlVectorType	TransformVector (const InputVnlVectorType &) const override

Public Member Functions inherited from itk::AdvancedTransform< TScalarType, NInputDimensions, NOutputDimensions >
void	ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const override

virtual bool	GetHasNonZeroJacobianOfSpatialHessian () const

	ITK_DISALLOW_COPY_AND_MOVE (AdvancedTransform)

	itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions)

	itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions)

Public Member Functions inherited from elastix::TransformBase< TElastix >
int	BeforeAllTransformix ()

void	ComputeAndWriteSpatialJacobianDeterminantImage () const

void	ComputeAndWriteSpatialJacobianMatrixImage () const

SpatialJacobianDeterminantImageType::Pointer	ComputeSpatialJacobianDeterminantImage () const

SpatialJacobianMatrixImageType::Pointer	ComputeSpatialJacobianMatrixImage () const

void	CreateTransformParameterMap (const ParametersType &param, ParameterMapType &parameterMap, const bool includeDerivedTransformParameters=true) const

ITKBaseType *	GetAsITKBaseType ()

const ITKBaseType *	GetAsITKBaseType () const

	ITK_DISALLOW_COPY_AND_MOVE (TransformBase)

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

void	ReadInitialTransformFromFile (const std::string &transformParameterFileName)

void	SetFinalParameters ()

void	SetInitialTransform (InitialTransformType *_arg)

void	SetReadWriteTransformParameters (const bool _arg)

void	SetTransformParameterFileName (const std::string &filename)

template<typename TMesh >
TMesh::Pointer	TransformMesh (const TMesh &mesh) const

void	TransformPoints () const

void	WriteToFile (std::ostream &transformationParameterInfo, const ParametersType &param) const

Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
void	AddTargetCellToIterationInfo (const char *const name)

const Configuration *	GetConfiguration () const

ElastixType *	GetElastix () const

auto &	GetIterationInfoAt (const char *const name)

RegistrationType *	GetRegistration () const

	ITK_DISALLOW_COPY_AND_MOVE (BaseComponentSE)

void	RemoveTargetCellFromIterationInfo (const char *const name)

void	SetConfiguration (const Configuration *_arg)

void	SetElastix (ElastixType *_arg)

Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration ()

virtual void	AfterEachIterationBase ()

virtual void	AfterEachResolution ()

virtual void	AfterEachResolutionBase ()

virtual void	AfterRegistration ()

virtual int	BeforeAll ()

virtual void	BeforeEachResolution ()

virtual void	BeforeEachResolutionBase ()

virtual void	BeforeRegistration ()

virtual const char *	elxGetClassName () const

const char *	GetComponentLabel () const

	ITK_DISALLOW_COPY_AND_MOVE (BaseComponent)

	itkTypeMacroNoParent (BaseComponent)

void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
static Pointer	New ()

Static Public Member Functions inherited from elastix::BaseComponent
template<typename TBaseComponent >
static auto	AsITKBaseType (TBaseComponent *const baseComponent) -> decltype(baseComponent->GetAsITKBaseType())

static void	InitializeElastixExecutable ()

static bool	IsElastixLibrary ()

Protected Member Functions
	DeformationFieldTransform ()

	~DeformationFieldTransform () override=default

Protected Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
	AdvancedCombinationTransform ()

void	EvaluateJacobianWithImageGradientProductNoCurrentTransform (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	EvaluateJacobianWithImageGradientProductNoInitialTransform (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	EvaluateJacobianWithImageGradientProductUseAddition (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	EvaluateJacobianWithImageGradientProductUseComposition (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	GetJacobianNoCurrentTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetJacobianNoInitialTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseAddition (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseAddition (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseComposition (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseComposition (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseAddition (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseAddition (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseComposition (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseComposition (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianUseAddition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetJacobianUseComposition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetSpatialHessianNoCurrentTransform (const InputPointType &inputPoint, SpatialHessianType &sh) const

void	GetSpatialHessianNoInitialTransform (const InputPointType &inputPoint, SpatialHessianType &sh) const

void	GetSpatialHessianUseAddition (const InputPointType &inputPoint, SpatialHessianType &sh) const

void	GetSpatialHessianUseComposition (const InputPointType &inputPoint, SpatialHessianType &sh) const

void	GetSpatialJacobianNoCurrentTransform (const InputPointType &inputPoint, SpatialJacobianType &sj) const

void	GetSpatialJacobianNoInitialTransform (const InputPointType &inputPoint, SpatialJacobianType &sj) const

void	GetSpatialJacobianUseAddition (const InputPointType &inputPoint, SpatialJacobianType &sj) const

void	GetSpatialJacobianUseComposition (const InputPointType &inputPoint, SpatialJacobianType &sj) const

OutputPointType	TransformPointNoCurrentTransform (const InputPointType &point) const

OutputPointType	TransformPointNoInitialTransform (const InputPointType &point) const

OutputPointType	TransformPointUseAddition (const InputPointType &point) const

OutputPointType	TransformPointUseComposition (const InputPointType &point) const

void	UpdateCombinationMethod ()

	~AdvancedCombinationTransform () override=default

Protected Member Functions inherited from itk::AdvancedTransform< TScalarType, NInputDimensions, NOutputDimensions >
	AdvancedTransform ()=default

	~AdvancedTransform () override=default

Protected Member Functions inherited from elastix::TransformBase< TElastix >
void	AutomaticScalesEstimation (ScalesType &scales) const

void	AutomaticScalesEstimationStackTransform (const unsigned int numSubTransforms, ScalesType &scales) const

bool	HasITKTransformParameters () const

	TransformBase ()=default

	~TransformBase () override=default

Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default

	~BaseComponentSE () override=default

Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default

virtual	~BaseComponent ()=default

Private Types
using	DirectionType = typename DeformationFieldType::DirectionType

Private Member Functions
ParameterMapType	CreateDerivedTransformParameterMap () const override

void	WriteDerivedTransformDataToFile () const override

Private Attributes
	elxOverrideGetSelfMacro

const DeformationFieldInterpolatingTransformPointer	m_DeformationFieldInterpolatingTransform

DirectionType	m_OriginalDeformationFieldDirection

Additional Inherited Members
Protected Attributes inherited from itk::AdvancedTransform< TScalarType, NInputDimensions, NOutputDimensions >
bool	m_HasNonZeroJacobianOfSpatialHessian { true }

bool	m_HasNonZeroSpatialHessian { true }

Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
Configuration::ConstPointer	m_Configuration {}

itk::WeakPointer< TElastix >	m_Elastix {}

RegistrationType *	m_Registration {}

Member Typedef Documentation

◆ CombinationTransformType

template<class TElastix >

using elastix::DeformationFieldTransform< TElastix >::CombinationTransformType = typename Superclass2::CombinationTransformType

Definition at line 123 of file elxDeformationFieldTransform.h.

◆ ConstPointer

template<class TElastix >

using elastix::DeformationFieldTransform< TElastix >::ConstPointer = itk::SmartPointer<const Self>

Definition at line 78 of file elxDeformationFieldTransform.h.

◆ CoordRepType

template<class TElastix >

using elastix::TransformBase< TElastix >::CoordRepType = ElastixBase::CoordRepType

Elastix typedef's.

Definition at line 156 of file elxTransformBase.h.

◆ DeformationFieldInterpolatingTransformPointer

template<class TElastix >

using elastix::DeformationFieldTransform< TElastix >::DeformationFieldInterpolatingTransformPointer = typename DeformationFieldInterpolatingTransformType::Pointer

Definition at line 113 of file elxDeformationFieldTransform.h.

◆ DeformationFieldInterpolatingTransformType

template<class TElastix >

using elastix::DeformationFieldTransform< TElastix >::DeformationFieldInterpolatingTransformType = itk::DeformationFieldInterpolatingTransform<typename elx::TransformBase<TElastix>::CoordRepType, elx::TransformBase<TElastix>::FixedImageDimension, float>

The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform

Definition at line 67 of file elxDeformationFieldTransform.h.

◆ DeformationFieldType

template<class TElastix >

using elastix::DeformationFieldTransform< TElastix >::DeformationFieldType = typename DeformationFieldInterpolatingTransformType::DeformationFieldType

Typedef's specific for the DeformationFieldInterpolatingTransform.

Definition at line 110 of file elxDeformationFieldTransform.h.

◆ DeformationFieldVectorType

template<class TElastix >

using elastix::DeformationFieldTransform< TElastix >::DeformationFieldVectorType = typename DeformationFieldInterpolatingTransformType::DeformationFieldVectorType

Definition at line 111 of file elxDeformationFieldTransform.h.

◆ DirectionType

template<class TElastix >

using elastix::DeformationFieldTransform< TElastix >::DirectionType = typename DeformationFieldType::DirectionType

private

Definition at line 146 of file elxDeformationFieldTransform.h.

◆ FixedImageType

template<class TElastix >

using elastix::TransformBase< TElastix >::FixedImageType = typename TElastix::FixedImageType

Definition at line 157 of file elxTransformBase.h.

◆ ITKBaseType

template<class TElastix >

using elastix::DeformationFieldTransform< TElastix >::ITKBaseType = typename Superclass2::ITKBaseType

Definition at line 122 of file elxDeformationFieldTransform.h.

◆ MovingImageType

template<class TElastix >

using elastix::TransformBase< TElastix >::MovingImageType = typename TElastix::MovingImageType

Definition at line 158 of file elxTransformBase.h.

◆ ParameterMapType

template<class TElastix >

using elastix::TransformBase< TElastix >::ParameterMapType = typename TElastix::ParameterMapType

Typedef that is used in the elastix dll version.

Definition at line 199 of file elxTransformBase.h.

◆ Pointer

template<class TElastix >

using elastix::DeformationFieldTransform< TElastix >::Pointer = itk::SmartPointer<Self>

Definition at line 77 of file elxDeformationFieldTransform.h.

◆ Self

template<class TElastix >

using elastix::DeformationFieldTransform< TElastix >::Self = DeformationFieldTransform

Standard ITK-stuff.

Definition at line 63 of file elxDeformationFieldTransform.h.

◆ Superclass1

template<class TElastix >

using elastix::DeformationFieldTransform< TElastix >::Superclass1 = itk::AdvancedCombinationTransform<typename elx::TransformBase<TElastix>::CoordRepType, elx::TransformBase<TElastix>::FixedImageDimension>

Definition at line 72 of file elxDeformationFieldTransform.h.

◆ Superclass2

template<class TElastix >

using elastix::DeformationFieldTransform< TElastix >::Superclass2 = elx::TransformBase<TElastix>

Definition at line 75 of file elxDeformationFieldTransform.h.

Constructor & Destructor Documentation

◆ DeformationFieldTransform()

template<class TElastix >

elastix::DeformationFieldTransform< TElastix >::DeformationFieldTransform ( )

protected

The constructor.

◆ ~DeformationFieldTransform()

template<class TElastix >

elastix::DeformationFieldTransform< TElastix >::~DeformationFieldTransform ( )

overrideprotecteddefault

The destructor.

Member Function Documentation

◆ CreateDerivedTransformParameterMap()

template<class TElastix >

ParameterMapType elastix::DeformationFieldTransform< TElastix >::CreateDerivedTransformParameterMap ( ) const

overrideprivatevirtual

Creates a map of the parameters specific for this (derived) transform type.

Implements elastix::TransformBase< TElastix >.

◆ elxClassNameMacro()

template<class TElastix >

elastix::DeformationFieldTransform< TElastix >::elxClassNameMacro ( "DeformationFieldTransform< TElastix >" )

Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "DeformationFieldTransform")

◆ GetClassName()

template<class TElastix >

virtual const char * elastix::DeformationFieldTransform< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<class TElastix >

elastix::DeformationFieldTransform< TElastix >::ITK_DISALLOW_COPY_AND_MOVE ( DeformationFieldTransform< TElastix > )

◆ itkStaticConstMacro()

template<class TElastix >

elastix::DeformationFieldTransform< TElastix >::itkStaticConstMacro	(	SpaceDimension	,
		unsigned int	,
		Superclass2::FixedImageDimension
	)

Dimension of the domain space.

◆ New()

template<class TElastix >

static Pointer elastix::DeformationFieldTransform< TElastix >::New ( )

static

Method for creation through the object factory.

◆ ReadFromFile()

template<class TElastix >

void elastix::DeformationFieldTransform< TElastix >::ReadFromFile ( )

overridevirtual

Function to read transform-parameters from a file.

Reimplemented from elastix::TransformBase< TElastix >.

◆ WriteDerivedTransformDataToFile()

template<class TElastix >

void elastix::DeformationFieldTransform< TElastix >::WriteDerivedTransformDataToFile ( ) const

overrideprivatevirtual

Writes its deformation field to a file.

Reimplemented from elastix::TransformBase< TElastix >.

Field Documentation

◆ elxOverrideGetSelfMacro

template<class TElastix >

elastix::DeformationFieldTransform< TElastix >::elxOverrideGetSelfMacro

private

Definition at line 136 of file elxDeformationFieldTransform.h.

◆ m_DeformationFieldInterpolatingTransform

template<class TElastix >

const DeformationFieldInterpolatingTransformPointer elastix::DeformationFieldTransform< TElastix >::m_DeformationFieldInterpolatingTransform

private

Initial value:

{
    DeformationFieldInterpolatingTransformType::New()
  }

The transform that is set as current transform in the CcombinationTransform

Definition at line 150 of file elxDeformationFieldTransform.h.

◆ m_OriginalDeformationFieldDirection

template<class TElastix >

DirectionType elastix::DeformationFieldTransform< TElastix >::m_OriginalDeformationFieldDirection

private

Original direction cosines; stored to facilitate UseDirectionCosines option.

Definition at line 155 of file elxDeformationFieldTransform.h.

Detailed Description

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Types

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ CombinationTransformType

◆ ConstPointer

◆ CoordRepType

◆ DeformationFieldInterpolatingTransformPointer

◆ DeformationFieldInterpolatingTransformType

◆ DeformationFieldType

◆ DeformationFieldVectorType

◆ DirectionType

◆ FixedImageType

◆ ITKBaseType

◆ MovingImageType

◆ ParameterMapType

◆ Pointer

◆ Self

◆ Superclass1

◆ Superclass2

Constructor & Destructor Documentation

◆ DeformationFieldTransform()

◆ ~DeformationFieldTransform()

Member Function Documentation

◆ CreateDerivedTransformParameterMap()

◆ elxClassNameMacro()

◆ GetClassName()

◆ ITK_DISALLOW_COPY_AND_MOVE()

◆ itkStaticConstMacro()

◆ New()

◆ ReadFromFile()

◆ WriteDerivedTransformDataToFile()

Field Documentation

◆ elxOverrideGetSelfMacro

◆ m_DeformationFieldInterpolatingTransform

◆ m_OriginalDeformationFieldDirection