elastix::BSplineStackTransform< TElastix > Class Template Reference

#include <elxBSplineStackTransform.h>

Detailed Description

template<class TElastix>
class elastix::BSplineStackTransform< TElastix >

A B-spline transform based on the itkStackTransform.

This transform is a B-spline transformation, with for every time point a separate D-1 dimensional B-spline transform. Calls to TransformPoint and GetJacobian are redirected to the appropriate sub transform based on the last dimension (time) index.

This transform uses the size, spacing and origin of the last dimension of the fixed image to set the number of sub transforms the origin of the first transform and the spacing between the transforms.

When supplying the B-spline parameters (grid) make sure to provide dimension - 1 elements.

The parameters used in this class are:

Parameters:

Transform: Select this transform as follows:
(Transform "BSplineStackTransform")

BSplineTransformSplineOrder: choose a B-spline order 1,2, or 3.
example: (BSplineTransformSplineOrder 3)
Default value: 3 (cubic B-splines).

FinalGridSpacingInVoxels: the grid spacing of the B-spline transform for each dimension.
example: (FinalGridSpacingInVoxels 8.0 8.0 8.0)
If only one argument is given, that factor is used for each dimension. The spacing is not in millimeters, but in "voxel size units". The default is 16.0 in every dimension.

FinalGridSpacingInPhysicalUnits: the grid spacing of the B-spline transform for each dimension.
example: (FinalGridSpacingInPhysicalUnits 8.0 8.0 8.0)
If only one argument is given, that factor is used for each dimension. The spacing is specified in millimeters. If not specified, the FinalGridSpacingInVoxels is used, or the FinalGridSpacing, to compute a FinalGridSpacingInPhysicalUnits. If those are not specified, the default value for FinalGridSpacingInVoxels is used to compute a FinalGridSpacingInPhysicalUnits. If an affine transformation is provided as initial transformation, the control grid will be scaled to cover the fixed image domain in the space defined by the initial transformation.

GridSpacingSchedule: the grid spacing downsampling factors for the B-spline transform for each dimension and each resolution.
example: (GridSpacingSchedule 4.0 4.0 2.0 2.0 1.0 1.0)
Which is an example for a 2D image, using 3 resolutions.
For convenience, you may also specify only one value for each resolution:
example: (GridSpacingSchedule 4.0 2.0 1.0 )
which is equivalent to the example above.

PassiveEdgeWidth: the width of a band of control points at the border of the B-spline coefficient image that should remain passive during optimisation.
Can be specified for each resolution.
example: (PassiveEdgeWidth 0 1 2)
The default is zero for all resolutions. A value of 4 will avoid all deformations at the edge of the image. Make sure that 2*PassiveEdgeWidth < ControlPointGridSize in each dimension.

The transform parameters necessary for transformix, additionally defined by this class, are:

Transform Parameters:

GridSize: stores the size of the B-spline grid.
example: (GridSize 16 16 16)

GridIndex: stores the index of the B-spline grid.
example: (GridIndex 0 0 0)

GridSpacing: stores the spacing of the B-spline grid.
example: (GridSpacing 16.0 16.0 16.0)

GridOrigin: stores the origin of the B-spline grid.
example: (GridOrigin 0.0 0.0 0.0)

GridDirection: stores the direction cosines of the B-spline grid.
example: (GridDirection 1.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.1)

BSplineTransformSplineOrder: stores the B-spline order 1,2, or 3.
example: (BSplineTransformSplineOrder 3) Default value: 3 (cubic B-splines).

StackSpacing: stores the spacing between the sub transforms.
exanoke: (StackSpacing 1.0)

StackOrigin: stores the origin of the first sub transform.
exanoke: (StackOrigin 0.0)

NumberOfSubTransforms: stores the number of sub transforms.
exanoke: (NumberOfSubTransforms 10)

Todo:

It is unsure what happens when one of the image dimensions has length 1.

Definition at line 112 of file elxBSplineStackTransform.h.

Inheritance diagram for elastix::BSplineStackTransform< TElastix >:

Public Types
typedef BSplineStackTransformType::Pointer	BSplineStackTransformPointer
typedef itk::StackTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(SpaceDimension), itkGetStaticConstMacro(SpaceDimension) >	BSplineStackTransformType
typedef BSplineTransformBaseType::Pointer	BSplineTransformBasePointer
typedef itk::AdvancedBSplineDeformableTransformBase< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(SpaceDimension) >	BSplineTransformBaseType
typedef itk::AdvancedBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(ReducedSpaceDimension), 3 >	BSplineTransformCubicType
typedef itk::AdvancedBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(ReducedSpaceDimension), 1 >	BSplineTransformLinearType
typedef itk::AdvancedBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(ReducedSpaceDimension), 2 >	BSplineTransformQuadraticType
typedef Superclass2::CombinationTransformType	CombinationTransformType
typedef Superclass2::ConfigurationPointer	ConfigurationPointer
typedef Superclass2::ConfigurationType	ConfigurationType
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass2::CoordRepType	CoordRepType
typedef BSplineTransformBaseType::DirectionType	DirectionType
typedef Superclass2::ElastixPointer	ElastixPointer
typedef Superclass2::ElastixType	ElastixType
typedef Superclass2::FixedImageType	FixedImageType
typedef GridScheduleComputerType::Pointer	GridScheduleComputerPointer
typedef itk::GridScheduleComputer< CoordRepType, ReducedSpaceDimension >	GridScheduleComputerType
typedef GridScheduleComputerType::VectorGridSpacingFactorType	GridScheduleType
typedef GridUpsamplerType::Pointer	GridUpsamplerPointer
typedef itk::UpsampleBSplineParametersFilter< ParametersType, ReducedDimensionImageType >	GridUpsamplerType
typedef BSplineTransformBaseType::ImagePointer	ImagePointer
typedef BSplineTransformBaseType::ImageType	ImageType
typedef BSplineTransformBaseType::IndexType	IndexType
typedef Superclass2::ITKBaseType	ITKBaseType
typedef Superclass2::MovingImageType	MovingImageType
typedef Superclass1::NumberOfParametersType	NumberOfParametersType
typedef BSplineTransformBaseType::OriginType	OriginType
typedef Superclass2::ParameterMapType	ParameterMapType
typedef Superclass1::ParametersType	ParametersType
typedef std::vector< std::string >	ParameterValueType
typedef itk::SmartPointer< Self >	Pointer
typedef ReducedDimensionBSplineTransformBaseType::Pointer	ReducedDimensionBSplineTransformBasePointer
typedef itk::AdvancedBSplineDeformableTransformBase< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(ReducedSpaceDimension) >	ReducedDimensionBSplineTransformBaseType
typedef ReducedDimensionImageType::DirectionType	ReducedDimensionDirectionType
typedef itk::Image< PixelType, itkGetStaticConstMacro(ReducedSpaceDimension) >	ReducedDimensionImageType
typedef ReducedDimensionRegionType::IndexType	ReducedDimensionIndexType
typedef ReducedDimensionImageType::PointType	ReducedDimensionOriginType
typedef itk::ImageRegion< itkGetStaticConstMacro(ReducedSpaceDimension) >	ReducedDimensionRegionType
typedef ReducedDimensionRegionType::SizeType	ReducedDimensionSizeType
typedef ReducedDimensionImageType::SpacingType	ReducedDimensionSpacingType
typedef BSplineTransformBaseType::RegionType	RegionType
typedef Superclass2::RegistrationPointer	RegistrationPointer
typedef Superclass2::RegistrationType	RegistrationType
typedef BSplineStackTransform	Self
typedef BSplineTransformBaseType::SizeType	SizeType
typedef BSplineTransformBaseType::SpacingType	SpacingType
typedef itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >	Superclass1
typedef elx::TransformBase< TElastix >	Superclass2
Public Types inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
typedef SmartPointer< const Self >	ConstPointer
typedef CurrentTransformType::ConstPointer	CurrentTransformConstPointer
typedef CurrentTransformType::InverseTransformBasePointer	CurrentTransformInverseTransformBasePointer
typedef CurrentTransformType::InverseTransformBaseType	CurrentTransformInverseTransformBaseType
typedef CurrentTransformType::Pointer	CurrentTransformPointer
typedef Superclass	CurrentTransformType
typedef Superclass::DerivativeType	DerivativeType
typedef void(Self::*	EvaluateJacobianWithImageGradientProductFunctionPointer) (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const
typedef Superclass::FixedParametersType	FixedParametersType
typedef void(Self::*	GetJacobianOfSpatialHessianFunctionPointer) (const InputPointType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const
typedef void(Self::*	GetJacobianOfSpatialHessianFunctionPointer2) (const InputPointType &, SpatialHessianType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const
typedef void(Self::*	GetJacobianOfSpatialJacobianFunctionPointer) (const InputPointType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const
typedef void(Self::*	GetJacobianOfSpatialJacobianFunctionPointer2) (const InputPointType &, SpatialJacobianType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const
typedef void(Self::*	GetSparseJacobianFunctionPointer) (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
typedef void(Self::*	GetSpatialHessianFunctionPointer) (const InputPointType &, SpatialHessianType &) const
typedef void(Self::*	GetSpatialJacobianFunctionPointer) (const InputPointType &, SpatialJacobianType &) const
typedef InitialTransformType::ConstPointer	InitialTransformConstPointer
typedef InitialTransformType::InverseTransformBasePointer	InitialTransformInverseTransformBasePointer
typedef InitialTransformType::InverseTransformBaseType	InitialTransformInverseTransformBaseType
typedef InitialTransformType::Pointer	InitialTransformPointer
typedef Superclass	InitialTransformType
typedef Superclass::InputCovariantVectorType	InputCovariantVectorType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InputVectorType	InputVectorType
typedef Superclass::InputVnlVectorType	InputVnlVectorType
typedef Superclass::InternalMatrixType	InternalMatrixType
typedef Superclass::InverseTransformBasePointer	InverseTransformBasePointer
typedef Superclass::InverseTransformBaseType	InverseTransformBaseType
typedef Superclass::JacobianOfSpatialHessianType	JacobianOfSpatialHessianType
typedef Superclass::JacobianOfSpatialJacobianType	JacobianOfSpatialJacobianType
typedef Superclass::JacobianType	JacobianType
typedef Superclass::MovingImageGradientType	MovingImageGradientType
typedef Superclass::MovingImageGradientValueType	MovingImageGradientValueType
typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
typedef Superclass::NumberOfParametersType	NumberOfParametersType
typedef Superclass::OutputCovariantVectorType	OutputCovariantVectorType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::OutputVectorType	OutputVectorType
typedef Superclass::OutputVnlVectorType	OutputVnlVectorType
typedef Superclass::ParametersType	ParametersType
typedef Superclass::ParametersValueType	ParametersValueType
typedef SmartPointer< Self >	Pointer
typedef Superclass::ScalarType	ScalarType
typedef AdvancedCombinationTransform	Self
typedef Superclass::SpatialHessianType	SpatialHessianType
typedef Superclass::SpatialJacobianType	SpatialJacobianType
typedef AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >	Superclass
typedef Superclass::TransformCategoryEnum	TransformCategoryEnum
typedef OutputPointType(Self::*	TransformPointFunctionPointer) (const InputPointType &) const
typedef Superclass::TransformType	TransformType
typedef TransformType::ConstPointer	TransformTypeConstPointer
typedef TransformType::Pointer	TransformTypePointer
Public Types inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::DerivativeType	DerivativeType
typedef Superclass::FixedParametersType	FixedParametersType
typedef Superclass::InputCovariantVectorType	InputCovariantVectorType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InputVectorType	InputVectorType
typedef Superclass::InputVnlVectorType	InputVnlVectorType
typedef SpatialJacobianType::InternalMatrixType	InternalMatrixType
typedef Superclass::InverseTransformBasePointer	InverseTransformBasePointer
typedef Superclass::InverseTransformBaseType	InverseTransformBaseType
typedef std::vector< SpatialHessianType >	JacobianOfSpatialHessianType
typedef std::vector< SpatialJacobianType >	JacobianOfSpatialJacobianType
typedef Superclass::JacobianType	JacobianType
typedef OutputCovariantVectorType	MovingImageGradientType
typedef MovingImageGradientType::ValueType	MovingImageGradientValueType
typedef std::vector< unsigned long >	NonZeroJacobianIndicesType
typedef Superclass::NumberOfParametersType	NumberOfParametersType
typedef Superclass::OutputCovariantVectorType	OutputCovariantVectorType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::OutputVectorType	OutputVectorType
typedef Superclass::OutputVnlVectorType	OutputVnlVectorType
typedef Superclass::ParametersType	ParametersType
typedef Superclass::ParametersValueType	ParametersValueType
typedef SmartPointer< Self >	Pointer
typedef Superclass::ScalarType	ScalarType
typedef AdvancedTransform	Self
typedef FixedArray< Matrix< ScalarType, InputSpaceDimension, InputSpaceDimension >, OutputSpaceDimension >	SpatialHessianType
typedef Matrix< ScalarType, OutputSpaceDimension, InputSpaceDimension >	SpatialJacobianType
typedef Transform< elx::TransformBase< TElastix >::CoordRepType, NInputDimensions, NOutputDimensions >	Superclass
typedef Transform< elx::TransformBase< TElastix >::CoordRepType, NInputDimensions, NOutputDimensions >	TransformType
typedef TransformType::ConstPointer	TransformTypeConstPointer
typedef TransformType::Pointer	TransformTypePointer
Public Types inherited from elastix::TransformBase< TElastix >
typedef itk::AdvancedCombinationTransform< CoordRepType, itkGetStaticConstMacro(FixedImageDimension) >	CombinationTransformType
typedef ConfigurationType::CommandLineArgumentMapType	CommandLineArgumentMapType
typedef ConfigurationType::CommandLineEntryType	CommandLineEntryType
typedef ComponentDatabase	ComponentDatabaseType
typedef ComponentDatabaseType::ComponentDescriptionType	ComponentDescriptionType
typedef Configuration::Pointer	ConfigurationPointer
typedef Configuration	ConfigurationType
typedef ElastixType::CoordRepType	CoordRepType
typedef itk::Image< VectorPixelType, FixedImageDimension >	DeformationFieldImageType
typedef itk::WeakPointer< ElastixType >	ElastixPointer
typedef TElastix	ElastixType
typedef ElastixType::FixedImageType	FixedImageType
typedef CombinationTransformType::InitialTransformType	InitialTransformType
typedef ITKBaseType::InputPointType	InputPointType
typedef itk::AdvancedTransform< CoordRepType, itkGetStaticConstMacro(FixedImageDimension), itkGetStaticConstMacro(MovingImageDimension) >	ITKBaseType
typedef RegistrationType::ITKBaseType	ITKRegistrationType
typedef ElastixType::MovingImageType	MovingImageType
typedef itk::Object	ObjectType
typedef ITKRegistrationType::OptimizerType	OptimizerType
typedef ITKBaseType::OutputPointType	OutputPointType
typedef ElastixType::ParameterMapType	ParameterMapType
typedef ITKBaseType::ParametersType	ParametersType
typedef elx::ProgressCommand	ProgressCommandType
typedef ComponentDatabase::PtrToCreator	PtrToCreator
typedef RegistrationType *	RegistrationPointer
typedef ElastixType::RegistrationBaseType	RegistrationType
typedef OptimizerType::ScalesType	ScalesType
typedef TransformBase	Self
typedef BaseComponentSE< TElastix >	Superclass
typedef ParametersType::ValueType	ValueType
typedef itk::Vector< float, FixedImageDimension >	VectorPixelType
Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef Configuration::Pointer	ConfigurationPointer
typedef Configuration	ConfigurationType
typedef itk::WeakPointer< ElastixType >	ElastixPointer
typedef TElastix	ElastixType
typedef RegistrationType *	RegistrationPointer
typedef ElastixType::RegistrationBaseType	RegistrationType
typedef BaseComponentSE	Self
typedef BaseComponent	Superclass

Public Member Functions
int	BeforeAll (void) override
void	BeforeEachResolution (void) override
void	BeforeRegistration (void) override
void	CreateTransformParametersMap (const ParametersType &param, ParameterMapType *paramsMap) const override
	elxClassNameMacro ("BSplineStackTransform")
virtual const char *	GetClassName () const
virtual void	IncreaseScale (void)
virtual void	InitializeTransform (void)
	itkStaticConstMacro (ReducedSpaceDimension, unsigned int, Superclass2::FixedImageDimension - 1)
	itkStaticConstMacro (SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
void	ReadFromFile (void) override
virtual void	SetOptimizerScales (const unsigned int edgeWidth)
void	WriteToFile (const ParametersType &param) const override
Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
void	EvaluateJacobianWithImageGradientProduct (const InputPointType &ipp, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
virtual const char *	GetClassName () const
const FixedParametersType &	GetFixedParameters (void) const override
bool	GetHasNonZeroSpatialHessian (void) const override
virtual bool	GetInverse (Self *inverse) const
void	GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
void	GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
void	GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
virtual const TransformTypePointer	GetNthTransform (SizeValueType n) const
NumberOfParametersType	GetNumberOfNonZeroJacobianIndices (void) const override
NumberOfParametersType	GetNumberOfParameters (void) const override
virtual SizeValueType	GetNumberOfTransforms (void) const
const ParametersType &	GetParameters (void) const override
void	GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const override
void	GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const override
TransformCategoryEnum	GetTransformCategory () const override
virtual bool	GetUseAddition () const
virtual bool	GetUseComposition () const
virtual bool	HasNonZeroJacobianOfSpatialHessian (void) const
bool	IsLinear (void) const override
	itkGetModifiableObjectMacro (CurrentTransform, CurrentTransformType)
	itkGetModifiableObjectMacro (InitialTransform, InitialTransformType)
	itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)
virtual void	SetCurrentTransform (CurrentTransformType *_arg)
void	SetFixedParameters (const FixedParametersType &fixedParam) override
virtual void	SetInitialTransform (InitialTransformType *_arg)
void	SetParameters (const ParametersType &param) override
void	SetParametersByValue (const ParametersType &param) override
virtual void	SetUseAddition (bool _arg)
virtual void	SetUseComposition (bool _arg)
OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &) const override
OutputPointType	TransformPoint (const InputPointType &point) const override
OutputVectorType	TransformVector (const InputVectorType &) const override
OutputVnlVectorType	TransformVector (const InputVnlVectorType &) const override
Public Member Functions inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
void	ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const override
virtual void	EvaluateJacobianWithImageGradientProduct (const InputPointType &ipp, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual const char *	GetClassName () const
virtual bool	GetHasNonZeroJacobianOfSpatialHessian () const
virtual bool	GetHasNonZeroSpatialHessian () const
virtual void	GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0
virtual void	GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0
virtual void	GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0
virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0
virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0
virtual NumberOfParametersType	GetNumberOfNonZeroJacobianIndices (void) const
virtual void	GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const=0
virtual void	GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const=0
	itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions)
	itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions)
Public Member Functions inherited from elastix::TransformBase< TElastix >
void	AfterRegistrationBase (void) override
int	BeforeAllBase (void) override
virtual int	BeforeAllTransformix (void)
void	BeforeRegistrationBase (void) override
virtual void	ComputeDeterminantOfSpatialJacobian (void) const
virtual void	ComputeSpatialJacobian (void) const
virtual void	CreateTransformParametersMap (const ParametersType &param, ParameterMapType *paramsMap) const
DeformationFieldImageType::Pointer	GenerateDeformationFieldImage (void) const
virtual CombinationTransformType *	GetAsCombinationTransform (void)
virtual const CombinationTransformType *	GetAsCombinationTransform (void) const
virtual ITKBaseType *	GetAsITKBaseType (void)
virtual const ITKBaseType *	GetAsITKBaseType (void) const
virtual const char *	GetClassName () const
virtual const InitialTransformType *	GetInitialTransform (void) const
virtual const char *	GetTransformParametersFileName () const
	ITK_DISALLOW_COPY_AND_ASSIGN (TransformBase)
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
virtual void	ReadFromFile (void)
virtual void	ReadInitialTransformFromFile (const char *transformParameterFileName)
virtual void	ReadInitialTransformFromVector (const vcl_size_t index)
virtual void	SetFinalParameters (void)
virtual void	SetInitialTransform (InitialTransformType *_arg)
virtual void	SetReadWriteTransformParameters (const bool _arg)
virtual void	SetTransformParametersFileName (const char *filename)
virtual void	TransformPoints (void) const
virtual void	TransformPointsAllPoints (void) const
virtual void	TransformPointsSomePoints (const std::string filename) const
virtual void	TransformPointsSomePointsVTK (const std::string filename) const
void	WriteDeformationFieldImage (typename DeformationFieldImageType::Pointer) const
virtual void	WriteToFile (const ParametersType &param) const
virtual void	WriteToFile (void) const
Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
ConfigurationType *	GetConfiguration (void) const
ElastixType *	GetElastix (void) const
RegistrationPointer	GetRegistration (void) const
	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponentSE)
void	SetConfiguration (ConfigurationType *_arg)
void	SetElastix (ElastixType *_arg)
Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration (void)
virtual void	AfterEachIterationBase (void)
virtual void	AfterEachResolution (void)
virtual void	AfterEachResolutionBase (void)
virtual void	AfterRegistration (void)
virtual void	AfterRegistrationBase (void)
virtual int	BeforeAll (void)
virtual int	BeforeAllBase (void)
virtual void	BeforeEachResolution (void)
virtual void	BeforeEachResolutionBase (void)
virtual void	BeforeRegistration (void)
virtual void	BeforeRegistrationBase (void)
virtual const char *	elxGetClassName (void) const
const char *	GetComponentLabel (void) const
	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponent)
	itkTypeMacroNoParent (BaseComponent)
void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
static Pointer	New ()
Static Public Member Functions inherited from elastix::BaseComponent
static std::string	ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision)
static void	InitializeElastixExecutable ()
static bool	IsElastixLibrary ()

Protected Member Functions
	BSplineStackTransform ()
virtual void	PreComputeGridInformation (void)
	~BSplineStackTransform () override
Protected Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
	AdvancedCombinationTransform ()
void	EvaluateJacobianWithImageGradientProductNoCurrentTransform (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const
void	EvaluateJacobianWithImageGradientProductNoInitialTransform (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const
void	EvaluateJacobianWithImageGradientProductUseAddition (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const
void	EvaluateJacobianWithImageGradientProductUseComposition (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const
void	GetJacobianNoCurrentTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
void	GetJacobianNoInitialTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
void	GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual void	GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
void	GetJacobianUseAddition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
void	GetJacobianUseComposition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const
void	GetSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh) const
void	GetSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh) const
void	GetSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh) const
void	GetSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh) const
void	GetSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj) const
void	GetSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj) const
void	GetSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj) const
void	GetSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj) const
virtual void	NoCurrentTransformSet (void) const
OutputPointType	TransformPointNoCurrentTransform (const InputPointType &point) const
OutputPointType	TransformPointNoInitialTransform (const InputPointType &point) const
OutputPointType	TransformPointUseAddition (const InputPointType &point) const
OutputPointType	TransformPointUseComposition (const InputPointType &point) const
virtual void	UpdateCombinationMethod (void)
	~AdvancedCombinationTransform () override
Protected Member Functions inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
	AdvancedTransform ()
	AdvancedTransform (NumberOfParametersType numberOfParameters)
	~AdvancedTransform () override
Protected Member Functions inherited from elastix::TransformBase< TElastix >
void	AutomaticScalesEstimation (ScalesType &scales) const
void	AutomaticScalesEstimationStackTransform (const unsigned int &numSubTransforms, ScalesType &scales) const
	TransformBase ()=default
	~TransformBase () override=default
Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default
	~BaseComponentSE () override=default
Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default
virtual	~BaseComponent ()=default

Private Member Functions
	BSplineStackTransform (const Self &)
unsigned int	InitializeBSplineTransform ()
void	operator= (const Self &)

Private Attributes
ReducedDimensionBSplineTransformBasePointer	m_BSplineDummySubTransform
BSplineStackTransformPointer	m_BSplineStackTransform
GridScheduleComputerPointer	m_GridScheduleComputer
GridUpsamplerPointer	m_GridUpsampler
unsigned int	m_NumberOfSubTransforms
unsigned int	m_SplineOrder
double	m_StackOrigin
double	m_StackSpacing

Additional Inherited Members
Protected Attributes inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
CurrentTransformPointer	m_CurrentTransform
InitialTransformPointer	m_InitialTransform
EvaluateJacobianWithImageGradientProductFunctionPointer	m_SelectedEvaluateJacobianWithImageGradientProductFunction
GetJacobianOfSpatialHessianFunctionPointer	m_SelectedGetJacobianOfSpatialHessianFunction
GetJacobianOfSpatialHessianFunctionPointer2	m_SelectedGetJacobianOfSpatialHessianFunction2
GetJacobianOfSpatialJacobianFunctionPointer	m_SelectedGetJacobianOfSpatialJacobianFunction
GetJacobianOfSpatialJacobianFunctionPointer2	m_SelectedGetJacobianOfSpatialJacobianFunction2
GetSparseJacobianFunctionPointer	m_SelectedGetSparseJacobianFunction
GetSpatialHessianFunctionPointer	m_SelectedGetSpatialHessianFunction
GetSpatialJacobianFunctionPointer	m_SelectedGetSpatialJacobianFunction
TransformPointFunctionPointer	m_SelectedTransformPointFunction
bool	m_UseAddition
bool	m_UseComposition
Protected Attributes inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
bool	m_HasNonZeroJacobianOfSpatialHessian
bool	m_HasNonZeroSpatialHessian
Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration {}
ElastixPointer	m_Elastix {}
RegistrationPointer	m_Registration {}

Member Typedef Documentation

BSplineStackTransformPointer

template<class TElastix >

typedef BSplineStackTransformType::Pointer elastix::BSplineStackTransform< TElastix >::BSplineStackTransformPointer

Definition at line 166 of file elxBSplineStackTransform.h.

BSplineStackTransformType

template<class TElastix >

typedef itk::StackTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( SpaceDimension ), itkGetStaticConstMacro( SpaceDimension ) > elastix::BSplineStackTransform< TElastix >::BSplineStackTransformType

Typedef for stack transform.

Definition at line 165 of file elxBSplineStackTransform.h.

BSplineTransformBasePointer

template<class TElastix >

typedef BSplineTransformBaseType::Pointer elastix::BSplineStackTransform< TElastix >::BSplineTransformBasePointer

Definition at line 153 of file elxBSplineStackTransform.h.

BSplineTransformBaseType

template<class TElastix >

typedef itk::AdvancedBSplineDeformableTransformBase< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( SpaceDimension ) > elastix::BSplineStackTransform< TElastix >::BSplineTransformBaseType

The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform.

Definition at line 152 of file elxBSplineStackTransform.h.

BSplineTransformCubicType

template<class TElastix >

typedef itk::AdvancedBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( ReducedSpaceDimension ), 3 > elastix::BSplineStackTransform< TElastix >::BSplineTransformCubicType

Definition at line 180 of file elxBSplineStackTransform.h.

BSplineTransformLinearType

template<class TElastix >

typedef itk::AdvancedBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( ReducedSpaceDimension ), 1 > elastix::BSplineStackTransform< TElastix >::BSplineTransformLinearType

Typedef for supported BSplineTransform types.

Definition at line 172 of file elxBSplineStackTransform.h.

BSplineTransformQuadraticType

template<class TElastix >

typedef itk::AdvancedBSplineDeformableTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( ReducedSpaceDimension ), 2 > elastix::BSplineStackTransform< TElastix >::BSplineTransformQuadraticType

Definition at line 176 of file elxBSplineStackTransform.h.

CombinationTransformType

template<class TElastix >

typedef Superclass2::CombinationTransformType elastix::BSplineStackTransform< TElastix >::CombinationTransformType

Definition at line 209 of file elxBSplineStackTransform.h.

ConfigurationPointer

template<class TElastix >

typedef Superclass2::ConfigurationPointer elastix::BSplineStackTransform< TElastix >::ConfigurationPointer

Definition at line 202 of file elxBSplineStackTransform.h.

ConfigurationType

template<class TElastix >

typedef Superclass2::ConfigurationType elastix::BSplineStackTransform< TElastix >::ConfigurationType

Definition at line 201 of file elxBSplineStackTransform.h.

ConstPointer

template<class TElastix >

typedef itk::SmartPointer< const Self > elastix::BSplineStackTransform< TElastix >::ConstPointer

Definition at line 129 of file elxBSplineStackTransform.h.

CoordRepType

template<class TElastix >

typedef Superclass2::CoordRepType elastix::BSplineStackTransform< TElastix >::CoordRepType

Definition at line 205 of file elxBSplineStackTransform.h.

DirectionType

template<class TElastix >

typedef BSplineTransformBaseType::DirectionType elastix::BSplineStackTransform< TElastix >::DirectionType

Definition at line 196 of file elxBSplineStackTransform.h.

ElastixPointer

template<class TElastix >

typedef Superclass2::ElastixPointer elastix::BSplineStackTransform< TElastix >::ElastixPointer

Definition at line 200 of file elxBSplineStackTransform.h.

ElastixType

template<class TElastix >

typedef Superclass2::ElastixType elastix::BSplineStackTransform< TElastix >::ElastixType

Typedef's from TransformBase.

Definition at line 199 of file elxBSplineStackTransform.h.

FixedImageType

template<class TElastix >

typedef Superclass2::FixedImageType elastix::BSplineStackTransform< TElastix >::FixedImageType

Definition at line 206 of file elxBSplineStackTransform.h.

GridScheduleComputerPointer

template<class TElastix >

typedef GridScheduleComputerType::Pointer elastix::BSplineStackTransform< TElastix >::GridScheduleComputerPointer

Definition at line 225 of file elxBSplineStackTransform.h.

GridScheduleComputerType

template<class TElastix >

typedef itk::GridScheduleComputer< CoordRepType, ReducedSpaceDimension > elastix::BSplineStackTransform< TElastix >::GridScheduleComputerType

Typedef's for the GridScheduleComputer and the UpsampleBSplineParametersFilter.

Definition at line 224 of file elxBSplineStackTransform.h.

GridScheduleType

template<class TElastix >

typedef GridScheduleComputerType::VectorGridSpacingFactorType elastix::BSplineStackTransform< TElastix >::GridScheduleType

Definition at line 227 of file elxBSplineStackTransform.h.

GridUpsamplerPointer

template<class TElastix >

typedef GridUpsamplerType::Pointer elastix::BSplineStackTransform< TElastix >::GridUpsamplerPointer

Definition at line 230 of file elxBSplineStackTransform.h.

GridUpsamplerType

template<class TElastix >

typedef itk::UpsampleBSplineParametersFilter< ParametersType, ReducedDimensionImageType > elastix::BSplineStackTransform< TElastix >::GridUpsamplerType

Definition at line 229 of file elxBSplineStackTransform.h.

ImagePointer

template<class TElastix >

typedef BSplineTransformBaseType::ImagePointer elastix::BSplineStackTransform< TElastix >::ImagePointer

Definition at line 190 of file elxBSplineStackTransform.h.

ImageType

template<class TElastix >

typedef BSplineTransformBaseType::ImageType elastix::BSplineStackTransform< TElastix >::ImageType

Definition at line 189 of file elxBSplineStackTransform.h.

IndexType

template<class TElastix >

typedef BSplineTransformBaseType::IndexType elastix::BSplineStackTransform< TElastix >::IndexType

Definition at line 192 of file elxBSplineStackTransform.h.

ITKBaseType

template<class TElastix >

typedef Superclass2::ITKBaseType elastix::BSplineStackTransform< TElastix >::ITKBaseType

Definition at line 208 of file elxBSplineStackTransform.h.

MovingImageType

template<class TElastix >

typedef Superclass2::MovingImageType elastix::BSplineStackTransform< TElastix >::MovingImageType

Definition at line 207 of file elxBSplineStackTransform.h.

NumberOfParametersType

template<class TElastix >

typedef Superclass1::NumberOfParametersType elastix::BSplineStackTransform< TElastix >::NumberOfParametersType

Definition at line 185 of file elxBSplineStackTransform.h.

OriginType

template<class TElastix >

typedef BSplineTransformBaseType::OriginType elastix::BSplineStackTransform< TElastix >::OriginType

Definition at line 195 of file elxBSplineStackTransform.h.

ParameterMapType

template<class TElastix >

typedef Superclass2::ParameterMapType elastix::BSplineStackTransform< TElastix >::ParameterMapType

Definition at line 184 of file elxBSplineStackTransform.h.

ParametersType

template<class TElastix >

typedef Superclass1::ParametersType elastix::BSplineStackTransform< TElastix >::ParametersType

Typedefs inherited from the superclass.

Definition at line 183 of file elxBSplineStackTransform.h.

ParameterValueType

template<class TElastix >

typedef std::vector< std::string > elastix::BSplineStackTransform< TElastix >::ParameterValueType

Typedef's creation of parameter map

Definition at line 233 of file elxBSplineStackTransform.h.

Pointer

template<class TElastix >

typedef itk::SmartPointer< Self > elastix::BSplineStackTransform< TElastix >::Pointer

Definition at line 128 of file elxBSplineStackTransform.h.

ReducedDimensionBSplineTransformBasePointer

template<class TElastix >

typedef ReducedDimensionBSplineTransformBaseType::Pointer elastix::BSplineStackTransform< TElastix >::ReducedDimensionBSplineTransformBasePointer

Definition at line 159 of file elxBSplineStackTransform.h.

ReducedDimensionBSplineTransformBaseType

template<class TElastix >

typedef itk::AdvancedBSplineDeformableTransformBase< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro( ReducedSpaceDimension ) > elastix::BSplineStackTransform< TElastix >::ReducedDimensionBSplineTransformBaseType

The ITK-class for the sub transforms, which have a reduced dimension.

Definition at line 158 of file elxBSplineStackTransform.h.

ReducedDimensionDirectionType

template<class TElastix >

typedef ReducedDimensionImageType::DirectionType elastix::BSplineStackTransform< TElastix >::ReducedDimensionDirectionType

Definition at line 219 of file elxBSplineStackTransform.h.

ReducedDimensionImageType

template<class TElastix >

typedef itk::Image< PixelType, itkGetStaticConstMacro( ReducedSpaceDimension ) > elastix::BSplineStackTransform< TElastix >::ReducedDimensionImageType

Reduced dimension image typedefs.

Definition at line 213 of file elxBSplineStackTransform.h.

ReducedDimensionIndexType

template<class TElastix >

typedef ReducedDimensionRegionType::IndexType elastix::BSplineStackTransform< TElastix >::ReducedDimensionIndexType

Definition at line 217 of file elxBSplineStackTransform.h.

ReducedDimensionOriginType

template<class TElastix >

typedef ReducedDimensionImageType::PointType elastix::BSplineStackTransform< TElastix >::ReducedDimensionOriginType

Definition at line 220 of file elxBSplineStackTransform.h.

ReducedDimensionRegionType

template<class TElastix >

typedef itk::ImageRegion< itkGetStaticConstMacro( ReducedSpaceDimension ) > elastix::BSplineStackTransform< TElastix >::ReducedDimensionRegionType

Definition at line 215 of file elxBSplineStackTransform.h.

ReducedDimensionSizeType

template<class TElastix >

typedef ReducedDimensionRegionType::SizeType elastix::BSplineStackTransform< TElastix >::ReducedDimensionSizeType

Definition at line 216 of file elxBSplineStackTransform.h.

ReducedDimensionSpacingType

template<class TElastix >

typedef ReducedDimensionImageType::SpacingType elastix::BSplineStackTransform< TElastix >::ReducedDimensionSpacingType

Definition at line 218 of file elxBSplineStackTransform.h.

RegionType

template<class TElastix >

typedef BSplineTransformBaseType::RegionType elastix::BSplineStackTransform< TElastix >::RegionType

Definition at line 191 of file elxBSplineStackTransform.h.

RegistrationPointer

template<class TElastix >

typedef Superclass2::RegistrationPointer elastix::BSplineStackTransform< TElastix >::RegistrationPointer

Definition at line 204 of file elxBSplineStackTransform.h.

RegistrationType

template<class TElastix >

typedef Superclass2::RegistrationType elastix::BSplineStackTransform< TElastix >::RegistrationType

Definition at line 203 of file elxBSplineStackTransform.h.

Self

template<class TElastix >

typedef BSplineStackTransform elastix::BSplineStackTransform< TElastix >::Self

Standard ITK-stuff.

Definition at line 123 of file elxBSplineStackTransform.h.

SizeType

template<class TElastix >

typedef BSplineTransformBaseType::SizeType elastix::BSplineStackTransform< TElastix >::SizeType

Definition at line 193 of file elxBSplineStackTransform.h.

SpacingType

template<class TElastix >

typedef BSplineTransformBaseType::SpacingType elastix::BSplineStackTransform< TElastix >::SpacingType

Definition at line 194 of file elxBSplineStackTransform.h.

Superclass1

template<class TElastix >

typedef itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > elastix::BSplineStackTransform< TElastix >::Superclass1

Definition at line 126 of file elxBSplineStackTransform.h.

Superclass2

template<class TElastix >

typedef elx::TransformBase< TElastix > elastix::BSplineStackTransform< TElastix >::Superclass2

Definition at line 127 of file elxBSplineStackTransform.h.

Constructor & Destructor Documentation

BSplineStackTransform() [1/2]

template<class TElastix >

elastix::BSplineStackTransform< TElastix >::BSplineStackTransform ( )

protected

The constructor.

~BSplineStackTransform()

template<class TElastix >

elastix::BSplineStackTransform< TElastix >::~BSplineStackTransform ( )

inlineoverrideprotected

The destructor.

Definition at line 297 of file elxBSplineStackTransform.h.

BSplineStackTransform() [2/2]

template<class TElastix >

elastix::BSplineStackTransform< TElastix >::BSplineStackTransform ( const Self &  )

private

The private constructor and copy constructor.

Member Function Documentation

BeforeAll()

template<class TElastix >

int elastix::BSplineStackTransform< TElastix >::BeforeAll ( void  )

overridevirtual

Execute stuff before anything else is done:

• Initialize the right BSplineTransform.
• Initialize the right grid schedule computer.
• Initialize upsample filter.

Reimplemented from elastix::BaseComponent.

BeforeEachResolution()

template<class TElastix >

void elastix::BSplineStackTransform< TElastix >::BeforeEachResolution ( void  )

overridevirtual

Execute stuff before each new pyramid resolution:

• In the first resolution call InitializeTransform().
• In next resolutions upsample the B-spline grid if necessary (so, call IncreaseScale())

Reimplemented from elastix::BaseComponent.

BeforeRegistration()

template<class TElastix >

void elastix::BSplineStackTransform< TElastix >::BeforeRegistration ( void  )

overridevirtual

Execute stuff before the actual registration:

• Create an initial B-spline grid.
• Set the stack transform parameters.
• Set initial sub transforms.
• Create initial registration parameters.
• PrecomputeGridInformation. Initially, the transform is set to use a 1x1x1 grid, with deformation (0,0,0). In the method BeforeEachResolution() this will be replaced by the right grid size. This seems not logical, but it is required, since the registration class checks if the number of parameters in the transform is equal to the number of parameters in the registration class. This check is done before calling the BeforeEachResolution() methods.

Reimplemented from elastix::BaseComponent.

CreateTransformParametersMap()

template<class TElastix >

void elastix::BSplineStackTransform< TElastix >::CreateTransformParametersMap ( const ParametersType &  param, ParameterMapType *  paramsMap  ) const

overridevirtual

Function to create transform-parameters map

Reimplemented from elastix::TransformBase< TElastix >.

elxClassNameMacro()

template<class TElastix >

elastix::BSplineStackTransform< TElastix >::elxClassNameMacro

(

"BSplineStackTransform< TElastix >"

)

Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "BSplineStackTransform")

GetClassName()

template<class TElastix >

virtual const char * elastix::BSplineStackTransform< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::TransformBase< TElastix >.

IncreaseScale()

template<class TElastix >

virtual void elastix::BSplineStackTransform< TElastix >::IncreaseScale ( void  )

virtual

Method to increase the density of the B-spline grid.

• Determine the new B-spline coefficients that describe the current deformation field for all sub transforms.
• Set these coefficients as InitialParametersOfNextLevel in the registration object. Called by BeforeEachResolution().

InitializeBSplineTransform()

template<class TElastix >

unsigned int elastix::BSplineStackTransform< TElastix >::InitializeBSplineTransform ( )

private

Initialize the right B-spline transform based on the spline order.

InitializeTransform()

template<class TElastix >

virtual void elastix::BSplineStackTransform< TElastix >::InitializeTransform ( void  )

virtual

Method to set the initial B-spline grid and grid scheduler and initialize the parameters (to 0).

• Define the initial grid region, origin and spacing, using the precomputed grid information.
• Set the initial parameters to zero and set then as InitialParametersOfNextLevel in the registration object. Called by BeforeEachResolution().

itkStaticConstMacro() [1/2]

template<class TElastix >

elastix::BSplineStackTransform< TElastix >::itkStaticConstMacro	(	ReducedSpaceDimension	,
		unsigned int	,
		Superclass2::FixedImageDimension -	1
	)

itkStaticConstMacro() [2/2]

template<class TElastix >

elastix::BSplineStackTransform< TElastix >::itkStaticConstMacro	(	SpaceDimension	,
		unsigned int	,
		Superclass2::FixedImageDimension
	)

(Reduced) dimension of the fixed image.

New()

template<class TElastix >

static Pointer elastix::BSplineStackTransform< TElastix >::New ( )

static

Method for creation through the object factory.

operator=()

template<class TElastix >

void elastix::BSplineStackTransform< TElastix >::operator= ( const Self &  )

private

PreComputeGridInformation()

template<class TElastix >

virtual void elastix::BSplineStackTransform< TElastix >::PreComputeGridInformation ( void  )

protectedvirtual

Read user-specified gridspacing and call the itkGridScheduleComputer.

ReadFromFile()

template<class TElastix >

void elastix::BSplineStackTransform< TElastix >::ReadFromFile ( void  )

overridevirtual

Function to read transform-parameters from a file.

Reimplemented from elastix::TransformBase< TElastix >.

SetOptimizerScales()

template<class TElastix >

virtual void elastix::BSplineStackTransform< TElastix >::SetOptimizerScales ( const unsigned int  edgeWidth )

virtual

Set the scales of the edge B-spline coefficients to zero.

WriteToFile()

template<class TElastix >

void elastix::BSplineStackTransform< TElastix >::WriteToFile ( const ParametersType &  param ) const

overridevirtual

Function to write transform-parameters to a file.

Reimplemented from elastix::TransformBase< TElastix >.

Field Documentation

m_BSplineDummySubTransform

template<class TElastix >

ReducedDimensionBSplineTransformBasePointer elastix::BSplineStackTransform< TElastix >::m_BSplineDummySubTransform

private

Dummy sub transform to be used to set sub transforms of stack transform.

Definition at line 311 of file elxBSplineStackTransform.h.

m_BSplineStackTransform

template<class TElastix >

BSplineStackTransformPointer elastix::BSplineStackTransform< TElastix >::m_BSplineStackTransform

private

The B-spline stack transform.

Definition at line 309 of file elxBSplineStackTransform.h.

m_GridScheduleComputer

template<class TElastix >

GridScheduleComputerPointer elastix::BSplineStackTransform< TElastix >::m_GridScheduleComputer

private

Grid schedule computer and grid upsampler.

Definition at line 314 of file elxBSplineStackTransform.h.

m_GridUpsampler

template<class TElastix >

GridUpsamplerPointer elastix::BSplineStackTransform< TElastix >::m_GridUpsampler

private

Definition at line 315 of file elxBSplineStackTransform.h.

m_NumberOfSubTransforms

template<class TElastix >

unsigned int elastix::BSplineStackTransform< TElastix >::m_NumberOfSubTransforms

private

Stack variables.

Definition at line 321 of file elxBSplineStackTransform.h.

m_SplineOrder

template<class TElastix >

unsigned int elastix::BSplineStackTransform< TElastix >::m_SplineOrder

private

Variable to remember order of B-spline transform.

Definition at line 318 of file elxBSplineStackTransform.h.

m_StackOrigin

template<class TElastix >

double elastix::BSplineStackTransform< TElastix >::m_StackOrigin

private

Definition at line 322 of file elxBSplineStackTransform.h.

m_StackSpacing

template<class TElastix >

double elastix::BSplineStackTransform< TElastix >::m_StackSpacing

private

Definition at line 322 of file elxBSplineStackTransform.h.