elastix::AdvancedTransformAdapter< TScalarType, NDimensions > Class Template Reference

#include <elxAdvancedTransformAdapter.h>

Detailed Description

template<class TScalarType, unsigned int NDimensions>
class elastix::AdvancedTransformAdapter< TScalarType, NDimensions >

Adapts the ITK transform that is specified by AdvancedTransformAdapter::SetExternalTransform to the elastix AdvancedTransform interface.

DO NOT USE IT FOR REGISTRATION. DO NOT USE IT TO RETRIEVE JACOBIAN OR THE HESSIAN VALUES.

Definition at line 38 of file elxAdvancedTransformAdapter.h.

Inheritance diagram for elastix::AdvancedTransformAdapter< TScalarType, NDimensions >:

Public Types
using	ConstPointer = itk::SmartPointer< const Self >
using	Pointer = itk::SmartPointer< Self >
using	Self = AdvancedTransformAdapter
using	Superclass = itk::AdvancedTransform< TScalarType, NDimensions, NDimensions >
Public Types inherited from itk::AdvancedTransform< TScalarType, NDimensions, NDimensions >
using	ConstPointer = SmartPointer< const Self >
using	InternalMatrixType = typename SpatialJacobianType::InternalMatrixType
using	InverseTransformBaseType = typename Superclass::InverseTransformBaseType
using	JacobianOfSpatialHessianType = std::vector< SpatialHessianType >
using	JacobianOfSpatialJacobianType = std::vector< SpatialJacobianType >
using	MovingImageGradientType = OutputCovariantVectorType
using	MovingImageGradientValueType = typename MovingImageGradientType::ValueType
using	NonZeroJacobianIndicesType = std::vector< unsigned long >
using	Pointer = SmartPointer< Self >
using	Self = AdvancedTransform
using	SpatialHessianType = FixedArray< Matrix< ScalarType, InputSpaceDimension, InputSpaceDimension >, OutputSpaceDimension >
using	SpatialJacobianType = Matrix< ScalarType, OutputSpaceDimension, InputSpaceDimension >
using	Superclass = Transform< TScalarType, NInputDimensions, NOutputDimensions >
using	TransformType = Transform< TScalarType, NInputDimensions, NOutputDimensions >
using	TransformTypeConstPointer = typename TransformType::ConstPointer
using	TransformTypePointer = typename TransformType::Pointer

Public Member Functions
virtual const char *	GetClassName () const
const ParametersType &	GetFixedParameters () const override
void	GetJacobian (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const override
void	GetJacobianOfSpatialHessian (const InputPointType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const override
void	GetJacobianOfSpatialHessian (const InputPointType &, SpatialHessianType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const override
void	GetJacobianOfSpatialJacobian (const InputPointType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const override
void	GetJacobianOfSpatialJacobian (const InputPointType &, SpatialJacobianType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const override
TransformType *	GetModifiableExternalTransform () const
void	GetSpatialHessian (const InputPointType &, SpatialHessianType &) const override
void	GetSpatialJacobian (const InputPointType &, SpatialJacobianType &) const override
bool	IsLinear () const override
	ITK_DISALLOW_COPY_AND_MOVE (AdvancedTransformAdapter)
	itkStaticConstMacro (InputSpaceDimension, unsigned int, Superclass::InputSpaceDimension)
	itkStaticConstMacro (OutputSpaceDimension, unsigned int, Superclass::OutputSpaceDimension)
virtual void	SetExternalTransform (TransformType *_arg)
void	SetFixedParameters (const ParametersType &) override
void	SetParameters (const ParametersType &parameters) override
OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &) const override
OutputPointType	TransformPoint (const InputPointType &point) const override
OutputVectorType	TransformVector (const InputVectorType &) const override
OutputVnlVectorType	TransformVector (const InputVnlVectorType &) const override
Public Member Functions inherited from itk::AdvancedTransform< TScalarType, NDimensions, NDimensions >
void	ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const override
virtual void	EvaluateJacobianWithImageGradientProduct (const InputPointType &inputPoint, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual bool	GetHasNonZeroJacobianOfSpatialHessian () const
virtual bool	GetHasNonZeroSpatialHessian () const
virtual NumberOfParametersType	GetNumberOfNonZeroJacobianIndices () const
	ITK_DISALLOW_COPY_AND_MOVE (AdvancedTransform)
	itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions)
	itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions)

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	AdvancedTransformAdapter ()=default
void	PrintSelf (std::ostream &os, itk::Indent indent) const override
	~AdvancedTransformAdapter () override=default
Protected Member Functions inherited from itk::AdvancedTransform< TScalarType, NDimensions, NDimensions >
	AdvancedTransform ()=default
	~AdvancedTransform () override=default

Private Attributes
itk::SmartPointer< TransformType >	m_ExternalTransform {}

Static Private Attributes
static constexpr const char *	unimplementedOverrideMessage = "Not implemented for AdvancedTransformAdapter"

Additional Inherited Members
Protected Attributes inherited from itk::AdvancedTransform< TScalarType, NDimensions, NDimensions >
bool	m_HasNonZeroJacobianOfSpatialHessian
bool	m_HasNonZeroSpatialHessian

Member Typedef Documentation

ConstPointer

template<class TScalarType , unsigned int NDimensions>

using elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::ConstPointer = itk::SmartPointer<const Self>

Definition at line 48 of file elxAdvancedTransformAdapter.h.

Pointer

template<class TScalarType , unsigned int NDimensions>

using elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::Pointer = itk::SmartPointer<Self>

Definition at line 47 of file elxAdvancedTransformAdapter.h.

Self

template<class TScalarType , unsigned int NDimensions>

using elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::Self = AdvancedTransformAdapter

Standard class typedefs.

Definition at line 45 of file elxAdvancedTransformAdapter.h.

Superclass

template<class TScalarType , unsigned int NDimensions>

using elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::Superclass = itk::AdvancedTransform<TScalarType, NDimensions, NDimensions>

Definition at line 46 of file elxAdvancedTransformAdapter.h.

Constructor & Destructor Documentation

AdvancedTransformAdapter()

template<class TScalarType , unsigned int NDimensions>

elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::AdvancedTransformAdapter ( )

protecteddefault

Default-constructor.

~AdvancedTransformAdapter()

template<class TScalarType , unsigned int NDimensions>

elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::~AdvancedTransformAdapter ( )

overrideprotecteddefault

Destructor.

Member Function Documentation

GetClassName()

template<class TScalarType , unsigned int NDimensions>

virtual const char * elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::AdvancedTransform< TScalarType, NDimensions, NDimensions >.

GetFixedParameters()

template<class TScalarType , unsigned int NDimensions>

const ParametersType & elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::GetFixedParameters ( ) const

inlineoverride

Get the fixed parameters.

Definition at line 99 of file elxAdvancedTransformAdapter.h.

GetJacobian()

template<class TScalarType , unsigned int NDimensions>

void elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::GetJacobian ( const InputPointType &  , JacobianType &  , NonZeroJacobianIndicesType &    ) const

inlineoverridevirtual

Must be provided.

Implements itk::AdvancedTransform< TScalarType, NDimensions, NDimensions >.

Definition at line 138 of file elxAdvancedTransformAdapter.h.

GetJacobianOfSpatialHessian() [1/2]

template<class TScalarType , unsigned int NDimensions>

void elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::GetJacobianOfSpatialHessian ( const InputPointType &  , JacobianOfSpatialHessianType &  , NonZeroJacobianIndicesType &    ) const

inlineoverridevirtual

Implements itk::AdvancedTransform< TScalarType, NDimensions, NDimensions >.

Definition at line 173 of file elxAdvancedTransformAdapter.h.

GetJacobianOfSpatialHessian() [2/2]

template<class TScalarType , unsigned int NDimensions>

void elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::GetJacobianOfSpatialHessian ( const InputPointType &  , SpatialHessianType &  , JacobianOfSpatialHessianType &  , NonZeroJacobianIndicesType &    ) const

inlineoverridevirtual

Implements itk::AdvancedTransform< TScalarType, NDimensions, NDimensions >.

Definition at line 181 of file elxAdvancedTransformAdapter.h.

GetJacobianOfSpatialJacobian() [1/2]

template<class TScalarType , unsigned int NDimensions>

void elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::GetJacobianOfSpatialJacobian ( const InputPointType &  , JacobianOfSpatialJacobianType &  , NonZeroJacobianIndicesType &    ) const

inlineoverridevirtual

Implements itk::AdvancedTransform< TScalarType, NDimensions, NDimensions >.

Definition at line 156 of file elxAdvancedTransformAdapter.h.

GetJacobianOfSpatialJacobian() [2/2]

template<class TScalarType , unsigned int NDimensions>

void elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::GetJacobianOfSpatialJacobian ( const InputPointType &  , SpatialJacobianType &  , JacobianOfSpatialJacobianType &  , NonZeroJacobianIndicesType &    ) const

inlineoverridevirtual

Implements itk::AdvancedTransform< TScalarType, NDimensions, NDimensions >.

Definition at line 164 of file elxAdvancedTransformAdapter.h.

GetModifiableExternalTransform()

template<class TScalarType , unsigned int NDimensions>

TransformType * elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::GetModifiableExternalTransform ( ) const

inline

Note

GetModifiableExternalTransform() is const, because it does not affect the adapter itself.

Definition at line 194 of file elxAdvancedTransformAdapter.h.

GetSpatialHessian()

template<class TScalarType , unsigned int NDimensions>

void elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::GetSpatialHessian ( const InputPointType &  , SpatialHessianType &    ) const

inlineoverridevirtual

Implements itk::AdvancedTransform< TScalarType, NDimensions, NDimensions >.

Definition at line 150 of file elxAdvancedTransformAdapter.h.

GetSpatialJacobian()

template<class TScalarType , unsigned int NDimensions>

void elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::GetSpatialJacobian ( const InputPointType &  , SpatialJacobianType &    ) const

inlineoverridevirtual

Implements itk::AdvancedTransform< TScalarType, NDimensions, NDimensions >.

Definition at line 144 of file elxAdvancedTransformAdapter.h.

IsLinear()

template<class TScalarType , unsigned int NDimensions>

bool elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::IsLinear ( ) const

inlineoverride

Definition at line 131 of file elxAdvancedTransformAdapter.h.

ITK_DISALLOW_COPY_AND_MOVE()

template<class TScalarType , unsigned int NDimensions>

elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::ITK_DISALLOW_COPY_AND_MOVE

(

AdvancedTransformAdapter< TScalarType, NDimensions >

)

itkStaticConstMacro() [1/2]

template<class TScalarType , unsigned int NDimensions>

elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::itkStaticConstMacro	(	InputSpaceDimension	,
		unsigned int	,
		Superclass::InputSpaceDimension
	)

Dimension of the domain spaces.

itkStaticConstMacro() [2/2]

template<class TScalarType , unsigned int NDimensions>

elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::itkStaticConstMacro	(	OutputSpaceDimension	,
		unsigned int	,
		Superclass::OutputSpaceDimension
	)

New()

template<class TScalarType , unsigned int NDimensions>

static Pointer elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::New ( )

static

New macro for creation of through the object factory.

PrintSelf()

template<class TScalarType , unsigned int NDimensions>

void elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::PrintSelf ( std::ostream &  os, itk::Indent  indent  ) const

inlineoverrideprotected

Print contents of an AdvancedTransformAdapter.

Definition at line 208 of file elxAdvancedTransformAdapter.h.

SetExternalTransform()

template<class TScalarType , unsigned int NDimensions>

virtual void elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::SetExternalTransform ( TransformType *  _arg )

virtual

SetFixedParameters()

template<class TScalarType , unsigned int NDimensions>

void elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::SetFixedParameters ( const ParametersType &  )

inlineoverride

Set the fixed parameters. Not implemented for this transform.

Definition at line 92 of file elxAdvancedTransformAdapter.h.

SetParameters()

template<class TScalarType , unsigned int NDimensions>

void elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::SetParameters ( const ParametersType &  parameters )

inlineoverride

Set the transformation parameters.

Definition at line 79 of file elxAdvancedTransformAdapter.h.

TransformCovariantVector()

template<class TScalarType , unsigned int NDimensions>

OutputCovariantVectorType elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::TransformCovariantVector ( const InputCovariantVectorType &  ) const

inlineoverride

Definition at line 125 of file elxAdvancedTransformAdapter.h.

TransformPoint()

template<class TScalarType , unsigned int NDimensions>

OutputPointType elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::TransformPoint ( const InputPointType &  point ) const

inlineoverride

Transform a point.

Definition at line 106 of file elxAdvancedTransformAdapter.h.

TransformVector() [1/2]

template<class TScalarType , unsigned int NDimensions>

OutputVectorType elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::TransformVector ( const InputVectorType &  ) const

inlineoverride

These vector transforms are not implemented for this transform.

Definition at line 113 of file elxAdvancedTransformAdapter.h.

TransformVector() [2/2]

template<class TScalarType , unsigned int NDimensions>

OutputVnlVectorType elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::TransformVector ( const InputVnlVectorType &  ) const

inlineoverride

Definition at line 119 of file elxAdvancedTransformAdapter.h.

Field Documentation

m_ExternalTransform

template<class TScalarType , unsigned int NDimensions>

itk::SmartPointer<TransformType> elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::m_ExternalTransform {}

private

Definition at line 231 of file elxAdvancedTransformAdapter.h.

unimplementedOverrideMessage

template<class TScalarType , unsigned int NDimensions>

constexpr const char* elastix::AdvancedTransformAdapter< TScalarType, NDimensions >::unimplementedOverrideMessage = "Not implemented for AdvancedTransformAdapter"

staticconstexprprivate

Definition at line 229 of file elxAdvancedTransformAdapter.h.