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| FITSImage (const String &name, uInt whichRep=0, uInt whichHDU=0) |
| Construct a FITSImage from the disk FITS file name and extension and apply mask. More...
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| FITSImage (const String &name, const MaskSpecifier &mask, uInt whichRep=0, uInt whichHDU=0) |
| Construct a FITSImage from the disk FITS file name and extension and apply mask or not. More...
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| FITSImage (const FITSImage &other) |
| Copy constructor (reference semantics) More...
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virtual | ~FITSImage () |
| Destructor does nothing. More...
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FITSImage & | operator= (const FITSImage &other) |
| Assignment (reference semantics) More...
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virtual ImageInterface< Float > * | cloneII () const |
| Make a copy of the object with new (reference semantics). More...
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virtual String | imageType () const |
| Get the image type (returns FITSImage). More...
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virtual void | resize (const TiledShape &newShape) |
| Function which changes the shape of the FITSImage. More...
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virtual Bool | isMasked () const |
| Has the object really a mask? The FITSImage always has a pixel mask and never has a region mask so this always returns True. More...
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virtual Bool | hasPixelMask () const |
| FITSimage always has a pixel mask so returns True. More...
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virtual const Lattice< Bool > & | pixelMask () const |
| Get access to the pixelmask. More...
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virtual Lattice< Bool > & | pixelMask () |
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virtual Bool | doGetMaskSlice (Array< Bool > &buffer, const Slicer §ion) |
| Do the actual get of the mask data. More...
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virtual const LatticeRegion * | getRegionPtr () const |
| Get the region used. More...
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virtual Bool | doGetSlice (Array< Float > &buffer, const Slicer &theSlice) |
| Do the actual get of the data. More...
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virtual void | doPutSlice (const Array< Float > &sourceBuffer, const IPosition &where, const IPosition &stride) |
| The FITSImage is not writable, so this throws an exception. More...
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virtual Bool | isPaged () const |
| The lattice is paged to disk. More...
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virtual Bool | isPersistent () const |
| The lattice is persistent. More...
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virtual Bool | isWritable () const |
| The FITSImage is not writable. More...
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virtual String | name (Bool stripPath=False) const |
| Returns the name of the disk file. More...
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virtual IPosition | shape () const |
| return the shape of the FITSImage More...
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virtual uInt | advisedMaxPixels () const |
| Returns the maximum recommended number of pixels for a cursor. More...
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virtual IPosition | doNiceCursorShape (uInt maxPixels) const |
| Help the user pick a cursor for most efficient access if they only want pixel values and don't care about the order or dimension of the cursor. More...
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virtual void | tempClose () |
| Temporarily close the image. More...
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virtual void | reopen () |
| Reopen a temporarily closed image. More...
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virtual Bool | ok () const |
| Check class invariants. More...
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virtual DataType | dataType () const |
| Return the data type (TpFloat). More...
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DataType | internalDataType () const |
| Return the (internal) data type. More...
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uInt | whichHDU () const |
| Return the HDU number. More...
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virtual uInt | maximumCacheSize () const |
| Maximum size - not necessarily all used. More...
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virtual void | setMaximumCacheSize (uInt howManyPixels) |
| Set the maximum (allowed) cache size as indicated. More...
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virtual void | setCacheSizeFromPath (const IPosition &sliceShape, const IPosition &windowStart, const IPosition &windowLength, const IPosition &axisPath) |
| Set the cache size as to "fit" the indicated path. More...
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virtual void | setCacheSizeInTiles (uInt howManyTiles) |
| Set the actual cache size for this Array to be be big enough for the indicated number of tiles. More...
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virtual void | clearCache () |
| Clears and frees up the caches, but the maximum allowed cache size is unchanged from when setCacheSize was called. More...
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virtual void | showCacheStatistics (ostream &os) const |
| Report on cache success. More...
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| ImageInterface () |
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| ImageInterface (const RegionHandler ®ionHandler) |
| Construct for a specific region handler object. More...
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| ImageInterface (const ImageInterface &other) |
| Copy constructor (copy semantics). More...
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virtual | ~ImageInterface () |
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virtual MaskedLattice< Float > * | cloneML () const |
| Make a copy of the derived object (reference semantics). More...
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virtual Bool | setUnits (const Unit &newUnits) |
| Function which get and set the units associated with the image pixels (i.e. More...
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virtual const Unit & | units () const |
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virtual Bool | setCoordinateInfo (const CoordinateSystem &coords) |
| Functions to set or replace the coordinate information in the Image Returns False on failure, e.g. More...
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const CoordinateSystem & | coordinates () const |
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virtual LELCoordinates | lelCoordinates () const |
| Function to get a LELCoordinate object containing the coordinates. More...
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LoggerHolder & | logger () |
| Get access to the LoggerHolder. More...
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const LoggerHolder & | logger () const |
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LogIO & | logSink () |
| Allow messages to be logged to this ImageInterface. More...
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const LogIO & | logSink () const |
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void | appendLog (const LoggerHolder &other) |
| Add the messages from the other image logger to this one. More...
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const TableRecord & | miscInfo () const |
| Often we have miscellaneous information we want to attach to an image. More...
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virtual Bool | setMiscInfo (const RecordInterface &newInfo) |
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const ImageInfo & | imageInfo () const |
| The ImageInfo object contains some miscellaneous information about the image which unlike that stored in MiscInfo, has a standard list of things, such as the restoring beam. More...
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ImageInfo & | rwImageInfo () |
| Get non-const access to the ImageInfo. More...
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virtual Bool | setImageInfo (const ImageInfo &info) |
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virtual ImageAttrHandler & | attrHandler (Bool createHandler=False) |
| Get access to the attribute handler. More...
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ImageAttrHandler & | roAttrHandler () const |
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Bool | canDefineRegion () const |
| Can the image handle region definition? More...
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virtual ImageRegion | makeMask (const String &name, Bool defineAsRegion=True, Bool setAsDefaultMask=True, Bool initialize=False, Bool value=True) |
| Make a mask which is suitable for the type of image. More...
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virtual void | defineRegion (const String &name, const ImageRegion ®ion, RegionHandler::GroupType, Bool overwrite=False) |
| Define a region/mask belonging to the image. More...
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virtual Bool | hasRegion (const String ®ionName, RegionHandler::GroupType=RegionHandler::Any) const |
| Does the image have a region with the given name? More...
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virtual ImageRegion * | getImageRegionPtr (const String &name, RegionHandler::GroupType=RegionHandler::Any, Bool throwIfUnknown=True) const |
| Get a region/mask belonging to the image from the given group (which can be Any). More...
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virtual void | renameRegion (const String &newName, const String &oldName, RegionHandler::GroupType=RegionHandler::Any, Bool overwrite=False) |
| Rename a region. More...
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virtual void | removeRegion (const String &name, RegionHandler::GroupType=RegionHandler::Any, Bool throwIfUnknown=True) |
| Remove a region/mask belonging to the image from the given group (which can be Any). More...
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virtual Vector< String > | regionNames (RegionHandler::GroupType=RegionHandler::Any) const |
| Get the names of all regions/masks. More...
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virtual void | useMask (MaskSpecifier=MaskSpecifier()) |
| Use the mask as specified. More...
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virtual void | setDefaultMask (const String ®ionName) |
| Set the default pixelmask to the mask with the given name (which has to exist in the "masks" group). More...
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virtual String | getDefaultMask () const |
| Get the name of the default pixelmask. More...
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ImageRegion | getRegion (const String ®ionName, RegionHandler::GroupType=RegionHandler::Any) const |
| Get a region belonging to the image. More...
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String | makeUniqueRegionName (const String &rootName, uInt startNumber=1) const |
| Make a unique region name from the given root name, thus make it such that the name is not already in use for a region or mask. More...
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Bool | toRecord (String &error, RecordInterface &outRec) |
| Save and restore an ImageInterface object to or from a state Record. More...
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Bool | fromRecord (String &error, const RecordInterface &inRec) |
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| MaskedLattice () |
| Default constructor. More...
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| MaskedLattice (const MaskedLattice< T > &) |
| Copy constructor. More...
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virtual | ~MaskedLattice () |
| a virtual destructor is needed so that it will use the actual destructor in the derived class More...
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virtual Lattice< T > * | clone () const |
| Make a copy of the derived object (reference semantics). More...
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const LatticeRegion & | region () const |
| Get the region used. More...
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Bool | getMask (COWPtr< Array< Bool > > &buffer, Bool removeDegenerateAxes=False) const |
| Get the mask or a slice from the mask. More...
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Bool | getMaskSlice (COWPtr< Array< Bool > > &buffer, const Slicer §ion, Bool removeDegenerateAxes=False) const |
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Bool | getMaskSlice (COWPtr< Array< Bool > > &buffer, const IPosition &start, const IPosition &shape, Bool removeDegenerateAxes=False) const |
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Bool | getMaskSlice (COWPtr< Array< Bool > > &buffer, const IPosition &start, const IPosition &shape, const IPosition &stride, Bool removeDegenerateAxes=False) const |
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Bool | getMask (Array< Bool > &buffer, Bool removeDegenerateAxes=False) |
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Bool | getMaskSlice (Array< Bool > &buffer, const Slicer §ion, Bool removeDegenerateAxes=False) |
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Bool | getMaskSlice (Array< Bool > &buffer, const IPosition &start, const IPosition &shape, Bool removeDegenerateAxes=False) |
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Bool | getMaskSlice (Array< Bool > &buffer, const IPosition &start, const IPosition &shape, const IPosition &stride, Bool removeDegenerateAxes=False) |
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Array< Bool > | getMask (Bool removeDegenerateAxes=False) const |
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Array< Bool > | getMaskSlice (const Slicer §ion, Bool removeDegenerateAxes=False) const |
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Array< Bool > | getMaskSlice (const IPosition &start, const IPosition &shape, Bool removeDegenerateAxes=False) const |
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Array< Bool > | getMaskSlice (const IPosition &start, const IPosition &shape, const IPosition &stride, Bool removeDegenerateAxes=False) const |
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virtual | ~Lattice () |
| a virtual destructor is needed so that it will use the actual destructor in the derived class More...
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T | operator() (const IPosition &where) const |
| Return the value of the single element located at the argument IPosition. More...
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virtual T | getAt (const IPosition &where) const |
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virtual void | putAt (const T &value, const IPosition &where) |
| Put the value of a single element. More...
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Bool | get (COWPtr< Array< T > > &buffer, Bool removeDegenerateAxes=False) const |
| Functions which extract an Array of values from a Lattice. More...
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Bool | getSlice (COWPtr< Array< T > > &buffer, const Slicer §ion, Bool removeDegenerateAxes=False) const |
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Bool | getSlice (COWPtr< Array< T > > &buffer, const IPosition &start, const IPosition &shape, Bool removeDegenerateAxes=False) const |
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Bool | getSlice (COWPtr< Array< T > > &buffer, const IPosition &start, const IPosition &shape, const IPosition &stride, Bool removeDegenerateAxes=False) const |
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Bool | get (Array< T > &buffer, Bool removeDegenerateAxes=False) |
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Bool | getSlice (Array< T > &buffer, const Slicer §ion, Bool removeDegenerateAxes=False) |
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Bool | getSlice (Array< T > &buffer, const IPosition &start, const IPosition &shape, Bool removeDegenerateAxes=False) |
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Bool | getSlice (Array< T > &buffer, const IPosition &start, const IPosition &shape, const IPosition &stride, Bool removeDegenerateAxes=False) |
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Array< T > | get (Bool removeDegenerateAxes=False) const |
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Array< T > | getSlice (const Slicer §ion, Bool removeDegenerateAxes=False) const |
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Array< T > | getSlice (const IPosition &start, const IPosition &shape, Bool removeDegenerateAxes=False) const |
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Array< T > | getSlice (const IPosition &start, const IPosition &shape, const IPosition &stride, Bool removeDegenerateAxes=False) const |
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void | putSlice (const Array< T > &sourceBuffer, const IPosition &where, const IPosition &stride) |
| A function which places an Array of values within this instance of the Lattice at the location specified by the IPosition "where", incrementing by "stride". More...
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void | putSlice (const Array< T > &sourceBuffer, const IPosition &where) |
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void | put (const Array< T > &sourceBuffer) |
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virtual void | set (const T &value) |
| Set all elements in the Lattice to the given value. More...
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virtual void | apply (T(*function)(T)) |
| Replace every element, x, of the Lattice with the result of f(x). More...
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virtual void | apply (T(*function)(const T &)) |
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virtual void | apply (const Functional< T, T > &function) |
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void | operator+= (const Lattice< T > &other) |
| Add, subtract, multiple, or divide by another Lattice. More...
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void | operator-= (const Lattice< T > &other) |
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void | operator*= (const Lattice< T > &other) |
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void | operator/= (const Lattice< T > &other) |
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virtual void | copyData (const Lattice< T > &from) |
| Copy the data from the given lattice to this one. More...
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virtual void | copyDataTo (Lattice< T > &to) const |
| Copy the data from this lattice to the given lattice. More...
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virtual LatticeIterInterface< T > * | makeIter (const LatticeNavigator &navigator, Bool useRef) const |
| These functions are used by the LatticeIterator class to generate an iterator of the correct type for a specified Lattice. More...
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virtual Bool | doGetSlice (Array< T > &buffer, const Slicer §ion)=0 |
| The functions (in the derived classes) doing the actual work. More...
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virtual void | doPutSlice (const Array< T > &buffer, const IPosition &where, const IPosition &stride)=0 |
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virtual | ~LatticeBase () |
| A virtual destructor is needed so that it will use the actual destructor in the derived class. More...
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virtual Bool | canReferenceArray () const |
| Can the lattice data be referenced as an array section? That is the case for an ArrayLattice or a Temp/SubLattice using it. More...
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virtual void | save (const String &fileName) const |
| Save the image in an AipsIO file with the given name. More...
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virtual Bool | lock (FileLocker::LockType, uInt nattempts) |
| It is strongly recommended to use class LatticeLocker to handle lattice locking. More...
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virtual void | unlock () |
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virtual Bool | hasLock (FileLocker::LockType) const |
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virtual void | resync () |
| Resynchronize the Lattice object with the lattice file. More...
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virtual void | flush () |
| Flush the data (but do not unlock). More...
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virtual uInt | ndim () const |
| Return the number of axes in this Lattice. More...
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virtual size_t | nelements () const |
| Return the total number of elements in this Lattice. More...
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size_t | size () const |
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Bool | conform (const LatticeBase &other) const |
| Return a value of "True" if this instance of Lattice and 'other' have the same shape, otherwise returns a value of "False". More...
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IPosition | niceCursorShape (uInt maxPixels) const |
| Returns a recommended cursor shape for iterating through all the pixels in the Lattice. More...
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IPosition | niceCursorShape () const |
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Class providing native access to FITS images.
Intended use:
Public interface
Review Status
- Test programs:
- tFITSImage
Prerequisite
Etymology
This class provides native access to FITS images. 64bit, 32bit floating point, 32 bit and 16bit integer FITS images are presently supported.
Synopsis
A FITSImage provides native access to FITS images by accessing them with the TiledFileAccess class. The FITSImage is read only. We could implement a writable FITSImage but putting the mask would lose data values (uses magic blanking) and FITS is really meant as an interchange medium, not an internal format.
Because FITS uses magic value blanking, the mask is generated on the fly as needed.
Example
ImageStatistics<Float> stats(im,
logger);
FITSImage(const String &name, uInt whichRep=0, uInt whichHDU=0)
Construct a FITSImage from the disk FITS file name and extension and apply mask.
virtual Bool ok() const
Check class invariants.
LoggerHolder & logger()
Get access to the LoggerHolder.
bool Bool
Define the standard types used by Casacore.
Motivation
This provides native access to FITS images.
Definition at line 108 of file FITSImage.h.