PhaseBaum

All Known Implementing Classes:: PhaseBaum2

public interface PhaseBaum

Interface PhaseBaum updates the estimated genotype phase of specified samples.

Instances of classes that implement PhaseBaum are not required to be thread-safe.

Method Summary

Modifier and Type

Method

Description

int

nTargSamples()

Returns the number of target samples.

void

phase(int sample)

Estimates and stores the phased haplotypes for the specified sample

Method Details
- nTargSamples
  
  int nTargSamples()
  
  Returns the number of target samples.
  
  Returns:
  
  the number of target samples
- phase
  
  void phase(int sample)
  
  Estimates and stores the phased haplotypes for the specified sample
  
  Parameters:
  
  sample - a sample index
  
  Throws:
  
  IndexOutOfBoundsException - if sample < 0 || sample >= this.nTargSamples()