Package bref

package bref
  • Class
    Description
    AsIsBref3Writer
    Class AsIsBref3Writer writes VCF data with phased, non-missing genotypes to a binary reference format v3 (bref) file.
    Bref3
    Class Bref3 converts files in VCF format into bref version 3 format.
    Bref3Header
    Class Bref3Header represents the header of a bref3 file (binary reference format version 3).
    Bref3It
    Class Bref3It represents an iterator whose next() which returns records from a bref version 3 file.
    Bref3Reader
    Class Bref3Reader contains methods for reading a bref3 (binary reference format version 3) file.
    BrefBlock
    Class BrefBlock represents starting chromosome coordinates and file offset for the start of a binary reference format (bref) data block.
    BrefWriter
    Interface BrefWrites writes phased, non-missing genotypes to a binary reference format (bref) file.
    CompressBref3Writer
    Class CompressBref3Writer writes phased, non-missing genotypes to a binary reference format v3 (bref) file.
    SeqCoder3
    Class SeqCoder3 compresses a sequence of allele-coded RefGTRec objects.
    UnBref3
    Class UnBref3 converts files in bref version 3 format into VCF format.